Improving the forward model for electrical impedance tomography of brain function through rapid generation of subject specific finite element models

Electrical Impedance Tomography (EIT) is a non-invasive imaging method which allows internal electrical impedance of any conductive object to be imaged by means of current injection and surface voltage measurements through an array of externally applied electrodes. The successful generation of the image requires the simulation of the current injection patterns on either an analytical or a numerical model of the domain under examination, known as the forward model, and using the resulting voltage data in the inverse solution from which images of conductivity changes can be constructed. Recent research strongly indicates that geometric and anatomical conformance of the forward model to the subject under investigation significantly affects the quality of the images. This thesis focuses mainly on EIT of brain function and describes a novel approach for the rapid generation of patient or subject specific finite element models for use as the forward model. After introduction of the topic, methods of generating accurate finite element (FE) models using commercially available Computer-Aided Design (CAD) tools are described and show that such methods, though effective and successful, are inappropriate for time critical clinical use. The feasibility of warping or morphing a finite element mesh as a means of reducing the lead time for model generation is then presented and demonstrated. This leads on to the description of methods of acquiring and utilising known system geometry, namely the positions of electrodes and registration landmarks, to construct an accurate surface of the subject, the results of which are successfully validated. The outcome of this procedure is then used to specify boundary conditions to a mesh warping algorithm based on elastic deformation using well-established continuum mechanics procedures. The algorithm is applied to a range of source models to empirically establish optimum values for the parameters defining the problem which can successfully generate meshes of acceptable quality in terms of discretization errors and which more accurately define the geometry of the target subject. Further validation of the algorithm is performed by comparison of boundary voltages and image reconstructions from simulated and laboratory data to demonstrate that benefits in terms of image artefact reduction and localisation of conductivity changes can be gained. The processes described in the thesis are evaluated and discussed and topics of further work and application are described

DICOM for EIT

With EIT starting to be used in routine clinical practice [1], it important that the clinically relevant information is portable between hospital data management systems. DICOM formats are widely used clinically and cover many imaging modalities, though not specifically EIT. We describe how existing DICOM specifications, can be repurposed as an interim solution, and basis from which a consensus EIT DICOM ‘Supplement’ (an extension to the standard) can be writte

Active complex electrode (ACE1) electrical impedance tomography system & anatomically inspired modeling of electrode-skin contact impedance, The

Includes bibliographical references.2016 Summer.Electrical Impedance Tomography (EIT) is a technique used to image the varying electrical properties of biological tissues or tissue conductivity and permittivity. There are many clinical uses of EIT, but as a newer imaging modality, there is interest in improving hardware to acquire EIT data, creating models of the system and generating high quality images. The two main contributions of this work include: (1) EIT hardware advancements and (2) software modeling to simulate measured human subject data. Specifically, this dissertation includes the design and testing of Colorado State University's first EIT system, the pairwise current injection active complex electrode (ACE1) system for phasic voltage measurement. The ACE1 system was primarily designed for thoracic EIT applications, and its performance and limitations were tested through a variety of experiments. Additionally, the EIT forward problem was used to investigate electrode-skin contact impedance

Brain and Human Body Modeling

This open access book describes modern applications of computational human modeling with specific emphasis in the areas of neurology and neuroelectromagnetics, depression and cancer treatments, radio-frequency studies and wireless communications. Special consideration is also given to the use of human modeling to the computational assessment of relevant regulatory and safety requirements. Readers working on applications that may expose human subjects to electromagnetic radiation will benefit from this book’s coverage of the latest developments in computational modelling and human phantom development to assess a given technology’s safety and efficacy in a timely manner. Describes construction and application of computational human models including anatomically detailed and subject specific models; Explains new practices in computational human modeling for neuroelectromagnetics, electromagnetic safety, and exposure evaluations; Includes a survey of modern applications for which computational human models are critical; Describes cellular-level interactions between the human body and electromagnetic fields

Noninvasive Neuromodulation: Modeling and Analysis of Transcranial Brain Stimulation with Applications to Electric and Magnetic Seizure Therapy

Bridging the fields of engineering and psychiatry, this dissertation proposes a novel framework for the rational dosing of electric and magnetic seizure therapy, including electroconvulsive therapy (ECT) and magnetic seizure therapy (MST), for the treatment of psychiatric disorders such as medication resistant major depression and schizophrenia. The objective of this dissertation is to develop computational modeling tools that allow ECT and MST stimulation paradigms to be biophysically optimized ex vivo, prior to testing safety and efficacy in preclinical and clinical trials. Despite therapeutic advances, treatment resistant depression (TRD) remains a largely unmet clinical need. ECT is highly effective for TRD, but its side effects limit its real-world clinical utility. Modifications of treatment technique (e.g., electrode placement, stimulus parameters, novel paradigms such as MST) significantly improve the tolerability of convulsive therapy. However, we know relatively little about the distribution of the electric field (E-field) induced in the brain to inform spatial targeting of ECT and MST. Lacking an understanding of biophysical and physiological mechanisms, refinements in ECT/MST technique rely exclusively on time-consuming and costly clinical trials. Consequently, key questions remain unanswered about how to position the ECT electrodes or MST coil for targeted brain stimulation. Addressing this knowledge gap, this dissertation proposes a new platform that will inform an improved spatial targeting of ECT and MST through state-of-the-art computer simulations of the E-field distribution in human and nonhuman primate (NHP) brain. Part I of this dissertation aims to develop anatomically realistic finite element models of transcranial electric and magnetic stimulation in human and NHPs incorporating tissue heterogeneity and anisotropy derived from structural magnetic resonance imaging (MRI) and diffusion tensor imaging (DTI) data. The NHP models of ECT and MST are created alongside the human model since NHPs are used in preclinical studies on the mechanisms of seizure therapy. Part II of this dissertation aims to apply the model developed in Part I to electric and magnetic seizure therapy. We compute the strength and spatial distributions of the E-field induced in the brain by various ECT and MST paradigms. The relative E-field strength among various regions of interest (ROIs) is examined to select electrode/coil configurations that produce most focal stimulation of target ROIs that are considered to mediate the therapeutic action of ECT and MST. Since E-field alone is insufficient to account for individual differences in neurophysiological response, we calibrate the E-field maps relative to the neural activation threshold via in vivo measurements of the corticospinal tract response to single pulses (motor threshold, MT). We derive an empirical estimate of the neural activation threshold by coupling simulated E-field strength with individually measured MT. The E-field strength relative to an empirical neural activation threshold and corresponding volume of suprathreshold stimulation (focality) is examined to inform the selection of ECT and MST stimulus pulse amplitude that will result in focal ROI stimulation. We contrast the ECT/MST stimulation strength and focality with conventional fixed and individually titrated pulse amplitude necessary to induce a seizure (seizure threshold, ST) to study pulse amplitude adjustment as a novel means of controlling stimulation strength and focality. This work provides a basis for rational dosing of seizure therapies that could help improve their risk/benefit ratio and guide the development of safer alternatives for patients with severe psychiatric disorders