A fast Bayesian approach to discrete object detection in astronomical datasets - PowellSnakes I

A new fast Bayesian approach is introduced for the detection of discrete objects immersed in a diffuse background. This new method, called PowellSnakes, speeds up traditional Bayesian techniques by: i) replacing the standard form of the likelihood for the parameters characterizing the discrete objects by an alternative exact form that is much quicker to evaluate; ii) using a simultaneous multiple minimization code based on Powell's direction set algorithm to locate rapidly the local maxima in the posterior; and iii) deciding whether each located posterior peak corresponds to a real object by performing a Bayesian model selection using an approximate evidence value based on a local Gaussian approximation to the peak. The construction of this Gaussian approximation also provides the covariance matrix of the uncertainties in the derived parameter values for the object in question. This new approach provides a speed up in performance by a factor of `hundreds' as compared to existing Bayesian source extraction methods that use MCMC to explore the parameter space, such as that presented by Hobson & McLachlan. We illustrate the capabilities of the method by applying to some simplified toy models. Furthermore PowellSnakes has the advantage of consistently defining the threshold for acceptance/rejection based on priors which cannot be said of the frequentist methods. We present here the first implementation of this technique (Version-I). Further improvements to this implementation are currently under investigation and will be published shortly. The application of the method to realistic simulated Planck observations will be presented in a forthcoming publication.Comment: 30 pages, 15 figures, revised version with minor changes, accepted for publication in MNRA

Smoothing and filtering with a class of outer measures

Filtering and smoothing with a generalised representation of uncertainty is considered. Here, uncertainty is represented using a class of outer measures. It is shown how this representation of uncertainty can be propagated using outer-measure-type versions of Markov kernels and generalised Bayesian-like update equations. This leads to a system of generalised smoothing and filtering equations where integrals are replaced by supremums and probability density functions are replaced by positive functions with supremum equal to one. Interestingly, these equations retain most of the structure found in the classical Bayesian filtering framework. It is additionally shown that the Kalman filter recursion can be recovered from weaker assumptions on the available information on the corresponding hidden Markov model

Quantifying Noise Limitations of Neural Network Segmentations in High-Resolution Transmission Electron Microscopy

Motivated by the need for low electron dose transmission electron microscopy imaging, we report the optimal frame dose (i.e. $e^-/A^{2}$) range for object detection and segmentation tasks with neural networks. The MSD-net architecture shows promising abilities over the industry standard U-net architecture in generalising to frame doses below the range included in the training set, for both simulated and experimental images. It also presents a heightened ability to learn from lower dose images. The MSD-net displays mild visibility of a Au nanoparticle at 20-30 $e^-/A^{2}$, and converges at 200 $e^-/A^{2}$ where a full segmentation of the nanoparticle is achieved. Between 30 and 200 $e^-/A^{2}$ object detection applications are still possible. This work also highlights the importance of modelling the modulation transfer function when training with simulated images for applications on images acquired with scintillator based detectors such as the Gatan Oneview camera. A parametric form of the modulation transfer function is applied with varying ranges of parameters, and the effects on low electron dose segmentation is presented.Comment: Revised version: Numerous clarifications and improvement

Reduced-Complexity Algorithms for Indoor Map-Aware Localization Systems

The knowledge of environmental maps (i.e., map-awareness) can appreciably improve the accuracy of optimal methods for position estimation in indoor scenarios. This improvement, however, is achieved at the price of a significant complexity increase with respect to the case of map-unawareness, specially for large maps. This is mainly due to the fact that optimal map-aware estimation algorithms require integrating highly nonlinear functions or solving nonlinear and nonconvex constrained optimization problems. In this paper, various techniques for reducing the complexity of such estimators are developed. In particular, two novel strategies for restricting the search domain of map-aware position estimators are developed and the exploitation of state-of-the-art numerical integration and optimization methods is investigated; this leads to the development of a new family of suboptimal map-aware localization algorithms. Our numerical and experimental results evidence that the accuracy of these algorithms is very close to that offered by their optimal counterparts, despite their significantly lower computational complexity

Path integrals, particular kinds, and strange things

This paper describes a path integral formulation of the free energy principle. The ensuing account expresses the paths or trajectories that a particle takes as it evolves over time. The main results are a method or principle of least action that can be used to emulate the behaviour of particles in open exchange with their external milieu. Particles are defined by a particular partition, in which internal states are individuated from external states by active and sensory blanket states. The variational principle at hand allows one to interpret internal dynamics - of certain kinds of particles - as inferring external states that are hidden behind blanket states. We consider different kinds of particles, and to what extent they can be imbued with an elementary form of inference or sentience. Specifically, we consider the distinction between dissipative and conservative particles, inert and active particles and, finally, ordinary and strange particles. Strange particles (look as if they) infer their own actions, endowing them with apparent autonomy or agency. In short - of the kinds of particles afforded by a particular partition - strange kinds may be apt for describing sentient behaviour.Comment: 31 pages (excluding references), 6 figure