Attention Gated Networks: Learning to Leverage Salient Regions in Medical Images

We propose a novel attention gate (AG) model for medical image analysis that automatically learns to focus on target structures of varying shapes and sizes. Models trained with AGs implicitly learn to suppress irrelevant regions in an input image while highlighting salient features useful for a specific task. This enables us to eliminate the necessity of using explicit external tissue/organ localisation modules when using convolutional neural networks (CNNs). AGs can be easily integrated into standard CNN models such as VGG or U-Net architectures with minimal computational overhead while increasing the model sensitivity and prediction accuracy. The proposed AG models are evaluated on a variety of tasks, including medical image classification and segmentation. For classification, we demonstrate the use case of AGs in scan plane detection for fetal ultrasound screening. We show that the proposed attention mechanism can provide efficient object localisation while improving the overall prediction performance by reducing false positives. For segmentation, the proposed architecture is evaluated on two large 3D CT abdominal datasets with manual annotations for multiple organs. Experimental results show that AG models consistently improve the prediction performance of the base architectures across different datasets and training sizes while preserving computational efficiency. Moreover, AGs guide the model activations to be focused around salient regions, which provides better insights into how model predictions are made. The source code for the proposed AG models is publicly available.Comment: Accepted for Medical Image Analysis (Special Issue on Medical Imaging with Deep Learning). arXiv admin note: substantial text overlap with arXiv:1804.03999, arXiv:1804.0533

Learning long-range spatial dependencies with horizontal gated-recurrent units

Progress in deep learning has spawned great successes in many engineering applications. As a prime example, convolutional neural networks, a type of feedforward neural networks, are now approaching -- and sometimes even surpassing -- human accuracy on a variety of visual recognition tasks. Here, however, we show that these neural networks and their recent extensions struggle in recognition tasks where co-dependent visual features must be detected over long spatial ranges. We introduce the horizontal gated-recurrent unit (hGRU) to learn intrinsic horizontal connections -- both within and across feature columns. We demonstrate that a single hGRU layer matches or outperforms all tested feedforward hierarchical baselines including state-of-the-art architectures which have orders of magnitude more free parameters. We further discuss the biological plausibility of the hGRU in comparison to anatomical data from the visual cortex as well as human behavioral data on a classic contour detection task.Comment: Published at NeurIPS 2018 https://papers.nips.cc/paper/7300-learning-long-range-spatial-dependencies-with-horizontal-gated-recurrent-unit

Deep multi-modal U-net fusion methodology of infrared and ultrasonic images for porosity detection in additive manufacturing

We developed a deep fusion methodology of non-destructive (NDT) in-situ infrared and ex- situ ultrasonic images for localization of porosity detection without compromising the integrity of printed components that aims to improve the Laser-based additive manufacturing (LBAM) process. A core challenge with LBAM is that lack of fusion between successive layers of printed metal can lead to porosity and abnormalities in the printed component. We developed a sensor fusion U-Net methodology that fills the gap in fusing in-situ thermal images with ex-situ ultrasonic images by employing a U-Net Convolutional Neural Network (CNN) for feature extraction and two-dimensional object localization. We modify the U-Net framework with the inception and LSTM block layers. We validate the models by comparing our single modality models and fusion models with ground truth X-ray computed tomography images. The inception U-Net fusion model localized porosity with the highest mean intersection over union score of 0.557