Lag, lock, sync, slip: the many 'phases' of coupled flagella

This is the final version of the article. Available from the Royal Society via the DOI in this recordIn a multitude of life's processes, cilia and flagella are found indispensable. Recently, the biflagellated chlorophyte alga Chlamydomonas has become a model organism for the study of ciliary motility and synchronization. Here, we use high-speed, high-resolution imaging of single pipette-held cells to quantify the rich dynamics exhibited by their flagella. Underlying this variability in behaviour are biological dissimilarities between the two flagella—termed cis and trans, with respect to a unique eyespot. With emphasis on the wild-type, we derive limit cycles and phase parametrizations for self-sustained flagellar oscillations from digitally tracked flagellar waveforms. Characterizing interflagellar phase synchrony via a simple model of coupled oscillators with noise, we find that during the canonical swimming breaststroke the cis flagellum is consistently phase-lagged relative to, while remaining robustly phase-locked with, the trans flagellum. Transient loss of synchrony, or phase slippage, may be triggered stochastically, in which the trans flagellum transitions to a second mode of beating with attenuated beat envelope and increased frequency. Further, exploiting this alga's ability for flagellar regeneration, we mechanically induced removal of one or the other flagellum of the same cell to reveal a striking disparity between the beatings of the cis and trans flagella, in isolation. These results are evaluated in the context of the dynamic coordination of Chlamydomonas flagella.Financial support is acknowledged from the EPSRC, ERC Advanced Investigator Grant 247333, and a Senior Investigator Award from the Wellcome Trust (R.E.G.)

Novel active sweat pores based liveness detection techniques for fingerprint biometrics

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University.Liveness detection in automatic fingerprint identification systems (AFIS) is an issue which still prevents its use in many unsupervised security applications. In the last decade, various hardware and software solutions for the detection of liveness from fingerprints have been proposed by academic research groups. However, the proposed methods have not yet been practically implemented with existing AFIS. A large amount of research is needed before commercial AFIS can be implemented. In this research, novel active pore based liveness detection methods were proposed for AFIS. These novel methods are based on the detection of active pores on fingertip ridges, and the measurement of ionic activity in the sweat fluid that appears at the openings of active pores. The literature is critically reviewed in terms of liveness detection issues. Existing fingerprint technology, and hardware and software solutions proposed for liveness detection are also examined. A comparative study has been completed on the commercially and specifically collected fingerprint databases, and it was concluded that images in these datasets do not contained any visible evidence of liveness. They were used to test various algorithms developed for liveness detection; however, to implement proper liveness detection in fingerprint systems a new database with fine details of fingertips is needed. Therefore a new high resolution Brunel Fingerprint Biometric Database (B-FBDB) was captured and collected for this novel liveness detection research. The first proposed novel liveness detection method is a High Pass Correlation Filtering Algorithm (HCFA). This image processing algorithm has been developed in Matlab and tested on B-FBDB dataset images. The results of the HCFA algorithm have proved the idea behind the research, as they successfully demonstrated the clear possibility of liveness detection by active pore detection from high resolution images. The second novel liveness detection method is based on the experimental evidence. This method explains liveness detection by measuring the ionic activities above the sample of ionic sweat fluid. A Micro Needle Electrode (MNE) based setup was used in this experiment to measure the ionic activities. In results, 5.9 pC to 6.5 pC charges were detected with ten NME positions (50μm to 360 μm) above the surface of ionic sweat fluid. These measurements are also a proof of liveness from active fingertip pores, and this technique can be used in the future to implement liveness detection solutions. The interaction of NME and ionic fluid was modelled in COMSOL multiphysics, and the effect of electric field variations on NME was recorded at 5μm -360μm positions above the ionic fluid.This study is funded by the University of Sindh, Jamshoro, Pakistan and the Higher Education Commission of Pakistan

Development of Markerless Systems for Automatic Analysis of Movements and Facial Expressions: Applications in Neurophysiology

This project is focused on the development of markerless methods for studying facial expressions and movements in neurology, focusing on Parkinson’s disease (PD) and disorders of consciousness (DOC). PD is a neurodegenerative illness that affects around 2% of the population over 65 years old. Impairments of voice/speech are among the main signs of PD. This set of impairments is called hypokinetic dysarthria, because of the reduced range of movements involved in speech. This reduction can be visible also in other facial muscles, leading to a hypomimia. Despite the high percentage of patients that suffer from dysarthria and hypomimia, only a few of them undergo speech therapy with the aim to improve the dynamic of articulatory/facial movements. The main reason is the lack of low cost methodologies that could be implemented at home. DOC after coma are Vegetative State (VS), characterized by the absence of self-awareness and awareness of the environment, and Minimally Conscious State (MCS), in which certain behaviors are sufficiently reproducible to be distinguished from reflex responses. The differential diagnosis between VS and MCS can be hard and prone to a high rate of misdiagnosis (~40%). This differential diagnosis is mainly based on neuro-behavioral scales. A key role to plan the rehabilitation in DOC patients is played by the first diagnosis after coma. In fact, MCS patients are more prone to a consciousness recovery than VS patients. Concerning PD the aim is the development of contactless systems that could be used to study symptoms related to speech and facial movements/expressions. The methods proposed here, based on acoustical analysis and video processing techniques could support patients during speech therapy also at home. Concerning DOC patients the project is focused on the assessment of reflex and cognitive responses to standardized stimuli. This would allow objectifying the perceptual analysis performed by clinicians