Fuzzy-based Propagation of Prior Knowledge to Improve Large-Scale Image Analysis Pipelines

Many automatically analyzable scientific questions are well-posed and offer a variety of information about the expected outcome a priori. Although often being neglected, this prior knowledge can be systematically exploited to make automated analysis operations sensitive to a desired phenomenon or to evaluate extracted content with respect to this prior knowledge. For instance, the performance of processing operators can be greatly enhanced by a more focused detection strategy and the direct information about the ambiguity inherent in the extracted data. We present a new concept for the estimation and propagation of uncertainty involved in image analysis operators. This allows using simple processing operators that are suitable for analyzing large-scale 3D+t microscopy images without compromising the result quality. On the foundation of fuzzy set theory, we transform available prior knowledge into a mathematical representation and extensively use it enhance the result quality of various processing operators. All presented concepts are illustrated on a typical bioimage analysis pipeline comprised of seed point detection, segmentation, multiview fusion and tracking. Furthermore, the functionality of the proposed approach is validated on a comprehensive simulated 3D+t benchmark data set that mimics embryonic development and on large-scale light-sheet microscopy data of a zebrafish embryo. The general concept introduced in this contribution represents a new approach to efficiently exploit prior knowledge to improve the result quality of image analysis pipelines. Especially, the automated analysis of terabyte-scale microscopy data will benefit from sophisticated and efficient algorithms that enable a quantitative and fast readout. The generality of the concept, however, makes it also applicable to practically any other field with processing strategies that are arranged as linear pipelines.Comment: 39 pages, 12 figure

Adaptive Non-singleton Type-2 Fuzzy Logic Systems: A Way Forward for Handling Numerical Uncertainties in Real World Applications

Real world environments are characterized by high levels of linguistic and numerical uncertainties. A Fuzzy Logic System (FLS) is recognized as an adequate methodology to handle the uncertainties and imprecision available in real world environments and applications. Since the invention of fuzzy logic, it has been applied with great success to numerous real world applications such as washing machines, food processors, battery chargers, electrical vehicles, and several other domestic and industrial appliances. The first generation of FLSs were type-1 FLSs in which type-1 fuzzy sets were employed. Later, it was found that using type-2 FLSs can enable the handling of higher levels of uncertainties. Recent works have shown that interval type-2 FLSs can outperform type-1 FLSs in the applications which encompass high uncertainty levels. However, the majority of interval type-2 FLSs handle the linguistic and input numerical uncertainties using singleton interval type-2 FLSs that mix the numerical and linguistic uncertainties to be handled only by the linguistic labels type-2 fuzzy sets. This ignores the fact that if input numerical uncertainties were present, they should affect the incoming inputs to the FLS. Even in the papers that employed non-singleton type-2 FLSs, the input signals were assumed to have a predefined shape (mostly Gaussian or triangular) which might not reflect the real uncertainty distribution which can vary with the associated measurement. In this paper, we will present a new approach which is based on an adaptive non-singleton interval type-2 FLS where the numerical uncertainties will be modeled and handled by non-singleton type-2 fuzzy inputs and the linguistic uncertainties will be handled by interval type-2 fuzzy sets to represent the antecedents’ linguistic labels. The non-singleton type-2 fuzzy inputs are dynamic and they are automatically generated from data and they do not assume a specific shape about the distribution associated with the given sensor. We will present several real world experiments using a real world robot which will show how the proposed type-2 non-singleton type-2 FLS will produce a superior performance to its singleton type-1 and type-2 counterparts when encountering high levels of uncertainties.</jats:p

Miniature mobile sensor platforms for condition monitoring of structures

In this paper, a wireless, multisensor inspection system for nondestructive evaluation (NDE) of materials is described. The sensor configuration enables two inspection modes-magnetic (flux leakage and eddy current) and noncontact ultrasound. Each is designed to function in a complementary manner, maximizing the potential for detection of both surface and internal defects. Particular emphasis is placed on the generic architecture of a novel, intelligent sensor platform, and its positioning on the structure under test. The sensor units are capable of wireless communication with a remote host computer, which controls manipulation and data interpretation. Results are presented in the form of automatic scans with different NDE sensors in a series of experiments on thin plate structures. To highlight the advantage of utilizing multiple inspection modalities, data fusion approaches are employed to combine data collected by complementary sensor systems. Fusion of data is shown to demonstrate the potential for improved inspection reliability

A hybrid EKF and switching PSO algorithm for joint state and parameter estimation of lateral flow immunoassay models

This is the post-print version of the Article. The official published can be accessed from the link below - Copyright @ 2012 IEEEIn this paper, a hybrid extended Kalman filter (EKF) and switching particle swarm optimization (SPSO) algorithm is proposed for jointly estimating both the parameters and states of the lateral flow immunoassay model through available short time-series measurement. Our proposed method generalizes the well-known EKF algorithm by imposing physical constraints on the system states. Note that the state constraints are encountered very often in practice that give rise to considerable difficulties in system analysis and design. The main purpose of this paper is to handle the dynamic modeling problem with state constraints by combining the extended Kalman filtering and constrained optimization algorithms via the maximization probability method. More specifically, a recently developed SPSO algorithm is used to cope with the constrained optimization problem by converting it into an unconstrained optimization one through adding a penalty term to the objective function. The proposed algorithm is then employed to simultaneously identify the parameters and states of a lateral flow immunoassay model. It is shown that the proposed algorithm gives much improved performance over the traditional EKF method.This work was supported in part by the International Science and Technology Cooperation Project of China under Grant 2009DFA32050, Natural Science Foundation of China under Grants 61104041, International Science and Technology Cooperation Project of Fujian Province of China under Grant 2009I0016

Incipient fault detection and isolation of sensors and field devices

The purpose of this research is to develop a robust fault detection and isolation method, for detecting faults in process sensors, actuators, controllers and other field devices. The approach to the solution to this problem is summarized below. A novel approach for the validation of control system components and sensors was developed in this research. The process is composed of detecting a system anomaly, isolating the faulty component (such as sensors, actuators, and controllers), computing its deviation from expected value for a given system\u27s normal condition, and finally reconstructing its output when applicable. A variant of the Group Method of Data Handling (GMDH) was developed in this research for generating analytical redundancy from relationships among different system components. A rational function approximation was used for the data-driven modeling scheme. This analytical redundancy is necessary for detecting system anomalies and isolating faulty components. A rule-base expert system was developed in order to isolate the faulty component. The rule-based was established from model-simulated data. A fuzzy-logic estimator was implemented to compute the magnitude of the loop component fault so that the operator or the controller might take corrective actions. This latter engine allows the system to be operated in a normal condition until the next scheduled shutdown, even if a critical component were detected as degrading. The effectiveness of the method developed in this research was demonstrated through simulation and by implementation to an experimental control loop. The test loop consisted of a level control system, flow, pressure, level and temperature measuring sensors, motor-operated valves, and a pump. Commonly observed device faults were imposed in different system components such as pressure transmitters, pumps, and motor-operated valves. This research has resulted in a framework for system component failure detection and isolation, allowing easy implementation of this method in any process control system (power plants, chemical industry, and other manufacturing industry). The technique would also aid the plant personnel in defining the minimal number of sensors to be installed in a process system, necessary for reliable component validation

The Maunakea Spectroscopic Explorer Book 2018

(Abridged) This is the Maunakea Spectroscopic Explorer 2018 book. It is intended as a concise reference guide to all aspects of the scientific and technical design of MSE, for the international astronomy and engineering communities, and related agencies. The current version is a status report of MSE's science goals and their practical implementation, following the System Conceptual Design Review, held in January 2018. MSE is a planned 10-m class, wide-field, optical and near-infrared facility, designed to enable transformative science, while filling a critical missing gap in the emerging international network of large-scale astronomical facilities. MSE is completely dedicated to multi-object spectroscopy of samples of between thousands and millions of astrophysical objects. It will lead the world in this arena, due to its unique design capabilities: it will boast a large (11.25 m) aperture and wide (1.52 sq. degree) field of view; it will have the capabilities to observe at a wide range of spectral resolutions, from R2500 to R40,000, with massive multiplexing (4332 spectra per exposure, with all spectral resolutions available at all times), and an on-target observing efficiency of more than 80%. MSE will unveil the composition and dynamics of the faint Universe and is designed to excel at precision studies of faint astrophysical phenomena. It will also provide critical follow-up for multi-wavelength imaging surveys, such as those of the Large Synoptic Survey Telescope, Gaia, Euclid, the Wide Field Infrared Survey Telescope, the Square Kilometre Array, and the Next Generation Very Large Array.Comment: 5 chapters, 160 pages, 107 figure

Fuzzy logic applications for data acquisition systems of practical measurement

In laboratory works, the error in measurement, reading the measurring devices, similarity of experimental data and lack of understanding of practicum materials are often found. These will lead to the inacurracy and invalid in data obtanined. As an alternative solution, application of fuzzy logic to the data acquisition system using a web server can used. This research focuses on the design of data acquisition systems with the target of reducing the error rate in measuring experimental data on the laboratory. Data measurement on laboratory practice module is done by taking the analog data resulted from the measurement. Furthermore, the data are converted into digital data via arduino and stored on the server. To get valid data, the server will process the data by using fuzzy logic method. The valid data are integrated into a web server so that it can be accessed as needed. The results showed that the data acquisition system based on fuzzy logic is able to provide recommendation of measurement result on the lab works based on the degree value of membership and truth value. Fuzzy logic will select the measured data with a maximum error percentage of 5% and select the measurement result which has minimum error rate

Fuzzy-logic-based control, filtering, and fault detection for networked systems: A Survey

This paper is concerned with the overview of the recent progress in fuzzy-logic-based filtering, control, and fault detection problems. First, the network technologies are introduced, the networked control systems are categorized from the aspects of fieldbuses and industrial Ethernets, the necessity of utilizing the fuzzy logic is justified, and the network-induced phenomena are discussed. Then, the fuzzy logic control strategies are reviewed in great detail. Special attention is given to the thorough examination on the latest results for fuzzy PID control, fuzzy adaptive control, and fuzzy tracking control problems. Furthermore, recent advances on the fuzzy-logic-based filtering and fault detection problems are reviewed. Finally, conclusions are given and some possible future research directions are pointed out, for example, topics on two-dimensional networked systems, wireless networked control systems, Quality-of-Service (QoS) of networked systems, and fuzzy access control in open networked systems.This work was supported in part by the National Natural Science Foundation of China under Grants 61329301, 61374039, 61473163, and 61374127, the Hujiang Foundation of China under Grants C14002 andD15009, the Engineering and Physical Sciences Research Council (EPSRC) of the UK, the Royal Society of the UK, and the Alexander von Humboldt Foundation of Germany