Strategies to overcome interferences during biomass monitoring with dielectric spectroscopy

Dielectric spectroscopy is extensively used to measure the level of viable biomass during fermentations but can suffer from interference by a variety of factors including the presence of dead cells, bubbles, electric and magnetic fields, changes in the medium composition, conductivity changes and the presence of non-cellular particles. Three different approaches were used to overcome these problems. The first involved the separate measurement of the spectra of the interferent and the cells. If the spectra were significantly different then spectra containing the signals of both cells and the interferent could be deconvoluted to separately determine the relative contribution of the cells and the interferent to the spectra. This deconvolution approach was successfully used to estimate the biomass levels of yeast in the presence of spent grains of barley and hardwood in the medium. A similar approach allowed the interference of electrode polarisation on spectra of yeast and microalgae to be compensated for. An attempt to determine the concentration of non-viable cells in a mixture of dead and live cells was less successful because the signal of the non-viable cells was quite small compared to that of viable cells. A second approach involved the use of a filter to keep the interferent away from the probe surface. This was used successfully in the measurement of the yeast concentration in the presence of spent barley grains. A third approach involved the use of a second sensor in addition to the biomass sensor. This allows the signal of the biomass sensor to be compensated for the interferent. In one set of experiments microelectrodes were developed which were able to confine the electric field to a small volume near the electrode surface. Covering the electrode surface with a gel or a membrane stopped cells from entering this volume whilst allowing medium to diffuse through. This allowed the measurement of changes in the electrical properties of the medium without a contribution by the cells. Whilst this approach worked, the response time was too long for practical use. More successful was the simultaneous measurement of the biomass with an infrared optical probe and a dielectric probe. It was found that the signal of the optical probe was independent of the cell viability, whilst the dielectric probe was quite insensitive to non-viable cells. The combined use of the dielectric probe and the optical probe allowed the culture viability to be determined in a straightforward manner

Extracellular vesicles from induced neurons trigger epigenetic silencing of a brain neurotransmitter.

Introduction: Antithrombin (AT) is a glycoprotein involved in the regulation of blood coagulation. It belongs to the family of serine-protease inhibitors and acts as the most important antagonist of different clot- ting factors. Two types of inherited AT deficiency can be distinguished: Type I (quantitative deficit), and Type II (qualitative deficit). The latter is characterized by an impaired inhibitory activity related to dysfunc- tional domains of the protein. Three Type II subtypes can be defined: Type IIa (reactive site defect), Type IIb (heparin binding site defect) and Type IIc (pleiotropic defect). This classification has clinical importance since these subtypes have a different thrombotic risk. No functional routine diagnostic assay, however, can be assumed to detect all forms of Type II deficiencies since false-negative results may hamper the diagnosis. Methods: We analysed the biochemical/biophysical association of ATT to EVs. We separated EVs from plasma of healthy or Type II affected patients or from cultured hepatocytes through differential ultracentrifu- gation followed by sucrose density gradient and/or immunoprecipitation. We next combined dot blot ana- lysis, WB, 2D electrophoresis and enzymatic assays to reveal the nature of ATT association to EVs. Results: We evidenced that ATT is associated to the external leaflet of EVs. We also found that specific ATT isoforms are enriched in EV preparations in respect to total plasma and that those isoforms are selectively associated to EVs when comparing healthy or ATT type II deficient patients. Summary/Conclusion: ATT selective association pat- tern to EVs might be related either to mutations in the primary sequence of the protein or alterations in the glycosylation process, hence experiments are ongoing to reveal the nature of this phenomenon. Our findings suggest that analysis of ATT enriched in EV prepara- tions might be useful to gain insights into the patho- genesis and be of support in the diagnostic algorithm of ATT deficiency. Funding: This work acknowledges FFABR (Fondo finanziamento attività Base di ricerca from MIUR, Ministry of Education, Universities and Research, Italy) for financial support