Model-Driven Development of Control Applications: On Modeling Tools, Simulations and Safety

Control systems are required in various industrial applications varying from individual machines to manufacturing plants and enterprises. Software applications have an important role as an implementation technology in such systems, which can be based on Distributed Control System (DCS) or Programmable Control System (PLC) platforms, for example. Control applications are computer programs that, with control system hardware, perform control tasks. Control applications are efficient and flexible by nature; however, their development is a complex task that requires the collaboration of experts and information from various domains of expertise.This thesis studies the use of Model-Driven Development (MDD) techniques in control application development. MDD is a software development methodology in which models are used as primary engineering artefacts and processed with both manual work and automated model transformations. The objective of the thesis is to explore whether or not control application development can benefit from MDD and selected technologies enabled by it. The research methodology followed in the thesis is the constructive approach of design science.To answer the research questions, tools are developed for modeling and developing control applications using UML Automation Profile (UML AP) in a model-driven development process. The modeling approach is developed based on open source tools on Eclipse platform. In the approach, modeling concepts are kept extendable. Models can be processed with model transformation techniques that plug in to the tool. The approach takes into account domain requirements related to, for example, re-use of design. According to assessment of industrial applicability of the approach and tools as part of it, they could be used for developing industrial DCS based control applications.Simulation approaches that can be used in conjunction to model-driven development of control applications are presented and compared. Development of a model-in-the-loop simulation support is rationalized to enable the use of simulations early while taking into account the special characteristics of the domain. A simulator integration is developed that transforms UML AP control application models to Modelica Modeling Language (ModelicaML) models, thus enabling closed-loop simulations with ModelicaML models of plants to be controlled. The simulation approach is applied successfully in simulations of machinery applications and process industry processes.Model-driven development of safety applications, which are parts of safety systems, would require taking into account safety standard requirements related to modeling techniques and documentation, for example. Related to this aspect, the thesis focuses on extending the information content of models with aspects that are required for safety applications. The modeling of hazards and their associated risks is supported with fault tree notation. The risk and hazard information is integrated into the development process in order to improve traceability. Automated functions enable generating documentation and performing consistency checks related to the use of standard solutions, for example. When applicable, techniques and notations, such as logic diagrams, have been chosen so that they are intuitive to developers but also comply with recommendations of safety standards

Model morphisms (MoMo) to enable language independent information models and interoperable business networks

MSc. Dissertation presented at Faculdade de Ciências e Tecnologia of Universidade Nova de Lisboa to obtain the Master degree in Electrical and Computer EngineeringWith the event of globalisation, the opportunities for collaboration became more evident with the effect of enlarging business networks. In such conditions, a key for enterprise success is a reliable communication with all the partners. Therefore, organisations have been searching for flexible integrated environments to better manage their services and product life cycle, where their software applications could be easily integrated independently of the platform in use. However, with so many different information models and implementation standards being used, interoperability problems arise. Moreover,organisations are themselves at different technological maturity levels, and the solution that might be good for one, can be too advanced for another, or vice-versa. This dissertation responds to the above needs, proposing a high level meta-model to be used at the entire business network, enabling to abstract individual models from their specificities and increasing language independency and interoperability, while keeping all the enterprise legacy software‟s integrity intact. The strategy presented allows an incremental mapping construction, to achieve a gradual integration. To accomplish this, the author proposes Model Driven Architecture (MDA) based technologies for the development of traceable transformations and execution of automatic Model Morphisms

Derivation and consistency checking of models in early software product line engineering

Dissertação para obtenção do Grau de Doutor em Engenharia InformáticaSoftware Product Line Engineering (SPLE) should offer the ability to express the derivation of product-specific assets, while checking for their consistency. The derivation of product-specific assets is possible using general-purpose programming languages in combination with techniques such as conditional compilation and code generation. On the other hand, consistency checking can be achieved through consistency rules in the form of architectural and design guidelines, programming conventions and well-formedness rules. Current approaches present four shortcomings: (1) focus on code derivation only, (2) ignore consistency problems between the variability model and other complementary specification models used in early SPLE, (3) force developers to learn new, difficult to master, languages to encode the derivation of assets, and (4) offer no tool support. This dissertation presents solutions that contribute to tackle these four shortcomings. These solutions are integrated in the approach Derivation and Consistency Checking of models in early SPLE (DCC4SPL) and its corresponding tool support. The two main components of our approach are the Variability Modelling Language for Requirements(VML4RE), a domain-specific language and derivation infrastructure, and the Variability Consistency Checker (VCC), a verification technique and tool. We validate DCC4SPL demonstrating that it is appropriate to find inconsistencies in early SPL model-based specifications and to specify the derivation of product-specific models.European Project AMPLE, contract IST-33710; Fundação para a Ciência e Tecnologia - SFRH/BD/46194/2008

Design and application of SuRFR: an R package to prioritise candidate functional DNA sequence variants

Genetic analyses such as linkage and genome wide association studies (GWAS) have been extremely successful at identifying genomic regions that harbour genetic variants contributing to complex disorders. Over 90% of disease-associated variants from GWAS fall within non-coding regions (Maurano et al., 2012). However, pinpointing the causal variants has proven a major bottleneck to genetic research. To address this I have developed SuRFR, an R package for the ranked prioritisation of candidate causal variants by predicted function. SuRFR produces rank orderings of variants based upon functional genomic annotations, including DNase hypersensitivity signal, chromatin state, minor allele frequency, and conservation. The ranks for each annotation are combined into a final prioritisation rank using a weighting system that has been parametrised and tested through ten-fold cross-validation. SuRFR has been tested extensively upon a combination of synthetic and real datasets and has been shown to perform with high sensitivity and specificity. These analyses have provided insight into the extent to which different classes of functional annotation are most useful for the identification of known regulatory variants: the most important factor for identifying a true variant across all classes of regulatory variants is position relative to genes. I have also shown that SuRFR performs at least as well as its nearest competitors whilst benefiting from the advantages that come from being part of the R environment. I have applied SuRFR to several genomics projects, particularly the study of psychiatric illness, including genome sequencing of a large Scottish family with bipolar disorder. This has resulted in the prioritisation of such variants for future study

On UML statechart with variabilities

El uso de métodos formales para el diseño de software contribuye a la confiabilidad y robustez del sistema a construir. A medida que los sistemas se vuelven complejos, el enfoque formal es esencial, debido a que permite la demostrabilidad y verificabilidad del diseño. El diseño formal es un proceso que comienza con la etapa de especificación, en la cual el sistema es de nido utilizando un lenguaje de modelado; luego la etapa de verificación, en la cual el sistema es analizado mediante un enfoque de corrección basado en pruebas formales utilizando herramientas matemá ticas y, por último, la etapa de implementación, en la cual la especificación se convierte en código ejecutable. El Lenguaje de Modelado Unificado (UML por sus siglas en inglés) es un lenguaje específico ampliamente utilizado en la industria y la academia. Desafortunadamente, carece de una semántica formal que permita el desarrollo de modelos utilizando un enfoque de corrección basado en pruebas formales. Este trabajo se centra en la especificación formal de familias de sistemas, y, en particular, en la semán- tica de máquinas de estados de UML (UML Statecharts) con variabilidades y sus aplicaciones a líneas de productos de software. La principal contribución es la definición de un formalismo que permite modelar el comportamiento de una familia de sistemas. Tal comportamiento se describe utilizando UML Statecharts en combinación con Diagramas de funcionalidades (Feature Diagrams), con el fin de representar las funcionalidades comunes y variantes de una familia. Para ello se define una relación de orden entre los UML Statecharts, que representa el hecho de que un statechart posee una estructura mas rica que otro. Luego se defi ne con precisión la forma de combinar diferentes extensiones de un mismo statechart. Utilizando estos conceptos, es posible definir el efecto que cada funcionalidad tiene en los productos en los cuales se encuentra presente.Estas definiciones proporcionan una forma muy simple de obtener la especificación del comportamiento de un producto de la línea como la combinación de los UML Statecharts que implementan todas las funcionalidades presentes en un producto en particular. Mas aún, se prueba que la relación de extensión propuesta constituye un refinamiento de comportamiento. El presente enfoque se compara con el estado del arte y se estudia su aplicación práctica con el n de visualizar sus bene cios y posibles debilidades. Adicionalmente, con el fin de comprobar la adecuación de la propuesta, una gran parte de las ideas fueron implementadas en un prototipo utilizando Prolog

Evolution of security engineering artifacts: a state of the art survey

Security is an important quality aspect of modern open software systems. However, it is challenging to keep such systems secure because of evolution. Security evolution can only be managed adequately if it is considered for all artifacts throughout the software development lifecycle. This article provides state of the art on the evolution of security engineering artifacts. The article covers the state of the art on evolution of security requirements, security architectures, secure code, security tests, security models, and security risks as well as security monitoring. For each of these artifacts the authors give an overview of evolution and security aspects and discuss the state of the art on its security evolution in detail. Based on this comprehensive survey, they summarize key issues and discuss directions of future research

Sustainability of systems interoperability in dynamic business networks

Dissertação para obtenção do Grau de Doutor em Engenharia Electrotécnica e de ComputadoresCollaborative networked environments emerged with the spread of the internet, contributing to overcome past communication barriers, and identifying interoperability as an essential property to support businesses development. When achieved seamlessly, efficiency is increased in the entire product life cycle support. However, due to the different sources of knowledge, models and semantics, enterprise organisations are experiencing difficulties exchanging critical information, even when they operate in the same business environments. To solve this issue, most of them try to attain interoperability by establishing peer-to-peer mappings with different business partners, or use neutral data and product standards as the core for information sharing, in optimized networks. In current industrial practice, the model mappings that regulate enterprise communications are only defined once, and most of them are hardcoded in the information systems. This solution has been effective and sufficient for static environments, where enterprise and product models are valid for decades. However, more and more enterprise systems are becoming dynamic, adapting and looking forward to meet further requirements; a trend that is causing new interoperability disturbances and efficiency reduction on existing partnerships. Enterprise Interoperability (EI) is a well established area of applied research, studying these problems, and proposing novel approaches and solutions. This PhD work contributes to that research considering enterprises as complex and adaptive systems, swayed to factors that are making interoperability difficult to sustain over time. The analysis of complexity as a neighbouring scientific domain, in which features of interoperability can be identified and evaluated as a benchmark for developing a new foundation of EI, is here proposed. This approach envisages at drawing concepts from complexity science to analyse dynamic enterprise networks and proposes a framework for sustaining systems interoperability, enabling different organisations to evolve at their own pace, answering the upcoming requirements but minimizing the negative impact these changes can have on their business environment

Consolidation of Customized Product Copies into Software Product Lines

In software development, project constraints lead to customer-specific variants by copying and adapting the product. During this process, modifications are scattered all over the code. Although this is flexible and efficient in the short term, a Software Product Line (SPL) offers better results in the long term, regarding cost reduction, time-to-market, and quality attributes. This book presents a novel approach named SPLevo, which consolidates customized product copies into an SPL