Energy landscapes, supergraphs, and "folding funnels" in spin systems

Dynamical connectivity graphs, which describe dynamical transition rates between local energy minima of a system, can be displayed against the background of a disconnectivity graph which represents the energy landscape of the system. The resulting supergraph describes both dynamics and statics of the system in a unified coarse-grained sense. We give examples of the supergraphs for several two dimensional spin and protein-related systems. We demonstrate that disordered ferromagnets have supergraphs akin to those of model proteins whereas spin glasses behave like random sequences of aminoacids which fold badly.Comment: REVTeX, 9 pages, two-column, 13 EPS figures include

Statistical mechanics of the vertex-cover problem

We review recent progress in the study of the vertex-cover problem (VC). VC belongs to the class of NP-complete graph theoretical problems, which plays a central role in theoretical computer science. On ensembles of random graphs, VC exhibits an coverable-uncoverable phase transition. Very close to this transition, depending on the solution algorithm, easy-hard transitions in the typical running time of the algorithms occur. We explain a statistical mechanics approach, which works by mapping VC to a hard-core lattice gas, and then applying techniques like the replica trick or the cavity approach. Using these methods, the phase diagram of VC could be obtained exactly for connectivities $c<e$, where VC is replica symmetric. Recently, this result could be confirmed using traditional mathematical techniques. For $c>e$, the solution of VC exhibits full replica symmetry breaking. The statistical mechanics approach can also be used to study analytically the typical running time of simple complete and incomplete algorithms for VC. Finally, we describe recent results for VC when studied on other ensembles of finite- and infinite-dimensional graphs.Comment: review article, 26 pages, 9 figures, to appear in J. Phys. A: Math. Ge

Dynamics of heuristic optimization algorithms on random graphs

In this paper, the dynamics of heuristic algorithms for constructing small vertex covers (or independent sets) of finite-connectivity random graphs is analysed. In every algorithmic step, a vertex is chosen with respect to its vertex degree. This vertex, and some environment of it, is covered and removed from the graph. This graph reduction process can be described as a Markovian dynamics in the space of random graphs of arbitrary degree distribution. We discuss some solvable cases, including algorithms already analysed using different techniques, and develop approximation schemes for more complicated cases. The approximations are corroborated by numerical simulations.Comment: 19 pages, 3 figures, version to app. in EPJ

Geometry and dimensionality reduction of feature spaces in primary visual cortex

Some geometric properties of the wavelet analysis performed by visual neurons are discussed and compared with experimental data. In particular, several relationships between the cortical morphologies and the parametric dependencies of extracted features are formalized and considered from a harmonic analysis point of view

Sampling properties of random graphs: the degree distribution

We discuss two sampling schemes for selecting random subnets from a network: Random sampling and connectivity dependent sampling, and investigate how the degree distribution of a node in the network is affected by the two types of sampling. Here we derive a necessary and sufficient condition that guarantees that the degree distribution of the subnet and the true network belong to the same family of probability distributions. For completely random sampling of nodes we find that this condition is fulfilled by classical random graphs; for the vast majority of networks this condition will, however, not be met. We furthermore discuss the case where the probability of sampling a node depends on the degree of a node and we find that even classical random graphs are no longer closed under this sampling regime. We conclude by relating the results to real {\it E.coli} protein interaction network data.Comment: accepted for publication in Phys.Rev.

Coevolution of agents and networks: Opinion spreading and community disconnection

We study a stochastic model for the coevolution of a process of opinion formation in a population of agents and the network which underlies their interaction. Interaction links can break when agents fail to reach an opinion agreement. The structure of the network and the distribution of opinions over the population evolve towards a state where the population is divided into disconnected communities whose agents share the same opinion. The statistical properties of this final state vary considerably as the model parameters are changed. Community sizes and their internal connectivity are the quantities used to characterize such variations.Comment: To appear in Phys. Lett.

Stabilisers as a design tool for new forms of Lechner-Hauke-Zoller Annealer

In a recent paper Lechner, Hauke and Zoller (LHZ) described a means to translate a Hamiltonian of $N$ spin-$\frac{1}{2}$ particles with 'all-to-all' interactions into a larger physical lattice with only on-site energies and local parity constraints. LHZ used this mapping to propose a novel form of quantum annealing. Here we provide a stabiliser-based formulation within which we can describe both this prior approach and a wide variety of variants. Examples include a triangular array supporting all-to-all connectivity, and moreover arrangements requiring only $2N$ or $N\log N$ spins but providing interesting bespoke connectivities. Further examples show that arbitrarily high order logical terms can be efficiently realised, even in a strictly 2D layout. Our stabilisers can correspond to either even-parity constraints, as in the LHZ proposal, or as odd-parity constraints. Considering the latter option applied to the original LHZ layout, we note it may simplify the physical realisation since the required ancillas are only spin-$\frac{1}{2}$ systems (i.e. qubits, rather than qutrits) and moreover the interactions are very simple. We make a preliminary assessment of the impact of this design choices by simulating small (few-qubit) systems; we find some indications that the new variant may maintain a larger minimum energy gap during the annealing process.Comment: A dramatically expanded revision: we now show how to use our stabiliser formulation to construct a wide variety of new physical layouts, including ones with fewer than Order N^2 spins but custom connectivities, and a means to achieve higher order coupling even in 2