A Simple Algorithm for Approximating the Text-To-Pattern Hamming Distance

The algorithmic task of computing the Hamming distance between a given pattern of length m and each location in a text of length n, both over a general alphabet Sigma, is one of the most fundamental algorithmic tasks in string algorithms. The fastest known runtime for exact computation is tilde O(nsqrt m). We recently introduced a complicated randomized algorithm for obtaining a (1 +/- eps) approximation for each location in the text in O( (n/eps) log(1/eps) log n log m log |Sigma|) total time, breaking a barrier that stood for 22 years. In this paper, we introduce an elementary and simple randomized algorithm that takes O((n/eps) log n log m) time

A Survey of Symbolic Methods in Computational Analysis of Cryptographic Systems

Since the 1980s, two approaches have been developed for analyzing security protocols. One of the approaches relies on a computational model that considers issues of complexity and probability. This approach captures a strong notion of security, guaranteed against all probabilistic polynomial-time attacks. The other approach relies on a symbolic model of protocol executions in which cryptographic primitives are treated as black boxes. Since the seminal work of Dolev and Yao, it has been realized that this latter approach enables significantly simpler and often automated proofs. However, the guarantees that it offers have been quite unclear. For more than twenty years the two approaches have coexisted but evolved mostly independently. Recently, significant research efforts attempt to develop paradigms for cryptographic systems analysis that combines the best of both worlds. There are two broad directions that have been followed. {\em Computational soundness} aims to establish sufficient conditions under which results obtained using symbolic models imply security under computational models. The {\em direct approach} aims to apply the principles and the techniques developed in the context of symbolic models directly to computational ones. In this paper we survey existing results along both of these directions. Our goal is to provide a rather complete summary that could act as a quick reference for researchers who want to contribute to the field, want to make use of existing results, or just want to get a better picture of what results already exist

Realizability Interpretation and Normalization of Typed Call-by-Need λ\lambda-calculus With Control

We define a variant of realizability where realizers are pairs of a term and a substitution. This variant allows us to prove the normalization of a simply-typed call-by-need \lambda$-$calculus with control due to Ariola et al. Indeed, in such call-by-need calculus, substitutions have to be delayed until knowing if an argument is really needed. In a second step, we extend the proof to a call-by-need \lambda$$-calculus equipped with a type system equivalent to classical second-order predicate logic, representing one step towards proving the normalization of the call-by-need classical second-order arithmetic introduced by the second author to provide a proof-as-program interpretation of the axiom of dependent choice

Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment

Background: TreeBASE, the only data repository for phylogenetic studies, is not being used effectively since it does not meet the taxonomic data retrieval requirements of the systematics community. We show, through an examination of the queries performed on TreeBASE, that data retrieval using taxon names is unsatisfactory. Results: We report on a new wrapper supporting taxon queries on TreeBASE by utilising a Taxonomy and Classification Database (TCl-Db) we created. TCl-Db holds merged and consolidated taxonomic names from multiple data sources and can be used to translate hierarchical, vernacular and synonym queries into specific query terms in TreeBASE. The query expansion supported by TCl-Db shows very significant information retrieval quality improvement. The wrapper can be accessed at the URL http://spira.zoology.gla.ac.uk/app/tbasewrapper.php The methodology we developed is scalable and can be applied to new data, as those become available in the future. Conclusion: Significantly improved data retrieval quality is shown for all queries, and additional flexibility is achieved via user-driven taxonomy selection

Strategies for Sustaining Digital Libraries

This collection of essays is a report of early findings from pioneers who have worked to establishdigital libraries, not merely as experimental projects, but as ongoing services and collectionsintended to be sustained over time in ways consistent with the long-held practices of print-basedlibraries. Particularly during this period of extreme technological transition, it is imperative thatprograms across the nation – and indeed the world – actively share their innovations,experiences, and techniques in order to begin cultivating new isomorphic, or commonly held,practices. The collective sentiment of the field is that we must begin to transition from apunctuated, project-based mode of advancing innovative information services to an ongoingprogrammatic mode of sustaining digital libraries for the long haul