Guarded Second-Order Logic, Spanning Trees, and Network Flows

According to a theorem of Courcelle monadic second-order logic and guarded second-order logic (where one can also quantify over sets of edges) have the same expressive power over the class of all countable $k$-sparse hypergraphs. In the first part of the present paper we extend this result to hypergraphs of arbitrary cardinality. In the second part, we present a generalisation dealing with methods to encode sets of vertices by single vertices

Diversities and the Geometry of Hypergraphs

The embedding of finite metrics in $\ell_1$ has become a fundamental tool for both combinatorial optimization and large-scale data analysis. One important application is to network flow problems in which there is close relation between max-flow min-cut theorems and the minimal distortion embeddings of metrics into $\ell_1$. Here we show that this theory can be generalized considerably to encompass Steiner tree packing problems in both graphs and hypergraphs. Instead of the theory of $\ell_1$ metrics and minimal distortion embeddings, the parallel is the theory of diversities recently introduced by Bryant and Tupper, and the corresponding theory of $\ell_1$ diversities and embeddings which we develop here.Comment: 19 pages, no figures. This version: further small correction

Hypergraph Laplace Operators for Chemical Reaction Networks

We generalize the normalized combinatorial Laplace operator for graphs by defining two Laplace operators for hypergraphs that can be useful in the study of chemical reaction networks. We also investigate some properties of their spectra.Comment: 23 pages, 7 figure

Embracing <i>n</i>-ary Relations in Network Science

Most network scientists restrict their attention to relations between pairs of things, even though most complex systems have structures and dynamics determined by n-ary relation where n is greater than two. Various examples are given to illustrate this. The basic mathematical structures allowing more than two vertices have existed for more than half a century, including hypergraphs and simplicial complexes. To these can be added hypernetworks which, like multiplex networks, allow many relations to be defined on the vertices. Furthermore, hypersimplices provide an essential formalism for representing multilevel part-whole and taxonomic structures for integrating the dynamics of systems between levels. Graphs, hypergraphs, networks, simplicial complex, multiplex network and hypernetworks form a coherent whole from which, for any particular application, the scientist can select the most suitable

Hypernetworks for reconstructing the dynamics of multilevel systems

Networks are fundamental for reconstructing the dynamics of many systems, but have the drawback that they are restricted to binary relations. Hypergraphs extend relational structure to multi-vertex edges, but are essentially set-theoretic and unable to represent essential structural properties. Hypernetworks are a natural multidimensional generalisation of networks, representing n-ary relations by simplices with n vertices. The assembly of vertices to make simplices is key for moving between levels in multilevel systems, and integrating dynamics between levels. It is argued that hypernetworks are necessary, if not sufficient, for reconstructing the dynamics of multilevel complex systems

The Densest k-Subhypergraph Problem

The Densest $k$-Subgraph (D$k$S) problem, and its corresponding minimization problem Smallest $p$-Edge Subgraph (S$p$ES), have come to play a central role in approximation algorithms. This is due both to their practical importance, and their usefulness as a tool for solving and establishing approximation bounds for other problems. These two problems are not well understood, and it is widely believed that they do not an admit a subpolynomial approximation ratio (although the best known hardness results do not rule this out). In this paper we generalize both D$k$S and S$p$ES from graphs to hypergraphs. We consider the Densest $k$-Subhypergraph problem (given a hypergraph $(V, E)$, find a subset $W\subseteq V$ of $k$ vertices so as to maximize the number of hyperedges contained in $W$) and define the Minimum $p$-Union problem (given a hypergraph, choose $p$ of the hyperedges so as to minimize the number of vertices in their union). We focus in particular on the case where all hyperedges have size 3, as this is the simplest non-graph setting. For this case we provide an $O(n^{4(4-\sqrt{3})/13 + \epsilon}) \leq O(n^{0.697831+\epsilon})$-approximation (for arbitrary constant $\epsilon > 0$) for Densest $k$-Subhypergraph and an $\tilde O(n^{2/5})$-approximation for Minimum $p$-Union. We also give an $O(\sqrt{m})$-approximation for Minimum $p$-Union in general hypergraphs. Finally, we examine the interesting special case of interval hypergraphs (instances where the vertices are a subset of the natural numbers and the hyperedges are intervals of the line) and prove that both problems admit an exact polynomial time solution on these instances.Comment: 21 page

Fraisse Limits, Ramsey Theory, and Topological Dynamics of Automorphism Groups

We study in this paper some connections between the Fraisse theory of amalgamation classes and ultrahomogeneous structures, Ramsey theory, and topological dynamics of automorphism groups of countable structures.Comment: 73 pages, LaTeX 2e, to appear in Geom. Funct. Ana