An improved artificial dendrite cell algorithm for abnormal signal detection

In dendrite cell algorithm (DCA), the abnormality of a data point is determined by comparing the multi-context antigen value (MCAV) with anomaly threshold. The limitation of the existing threshold is that the value needs to be determined before mining based on previous information and the existing MCAV is inefficient when exposed to extreme values. This causes the DCA fails to detect new data points if the pattern has distinct behavior from previous information and affects detection accuracy. This paper proposed an improved anomaly threshold solution for DCA using the statistical cumulative sum (CUSUM) with the aim to improve its detection capability. In the proposed approach, the MCAV were normalized with upper CUSUM and the new anomaly threshold was calculated during run time by considering the acceptance value and min MCAV. From the experiments towards 12 benchmark and two outbreak datasets, the improved DCA is proven to have a better detection result than its previous version in terms of sensitivity, specificity, false detection rate and accuracy

A multi-view approach to cDNA micro-array analysis

The official published version can be obtained from the link below.Microarray has emerged as a powerful technology that enables biologists to study thousands of genes simultaneously, therefore, to obtain a better understanding of the gene interaction and regulation mechanisms. This paper is concerned with improving the processes involved in the analysis of microarray image data. The main focus is to clarify an image's feature space in an unsupervised manner. In this paper, the Image Transformation Engine (ITE), combined with different filters, is investigated. The proposed methods are applied to a set of real-world cDNA images. The MatCNN toolbox is used during the segmentation process. Quantitative comparisons between different filters are carried out. It is shown that the CLD filter is the best one to be applied with the ITE.This work was supported in part by the Engineering and Physical Sciences Research Council (EPSRC) of the UK under Grant GR/S27658/01, the National Science Foundation of China under Innovative Grant 70621001, Chinese Academy of Sciences under Innovative Group Overseas Partnership Grant, the BHP Billiton Cooperation of Australia Grant, the International Science and Technology Cooperation Project of China under Grant 2009DFA32050 and the Alexander von Humboldt Foundation of Germany

Intelligent Pattern Analysis of the Foetal Electrocardiogram

The aim of the project on which this thesis is based is to develop reliable techniques for foetal electrocardiogram (ECG) based monitoring, to reduce incidents of unnecessary medical intervention and foetal injury during labour. World-wide electronic foetal monitoring is based almost entirely on the cardiotocogram (CTG), which is a continuous display of the foetal heart rate (FHR) pattern together with the contraction of the womb. Despite the widespread use of the CTG, there is no significant improvement in foetal outcome. In the UK alone it is estimated that birth related negligence claims cost the health authorities over £400M per-annum. An expert system, known as INFANT, has recently been developed to assist CTG interpretation. However, the CTG alone does not always provide all the information required to improve the outcome of labour. The widespread use of ECG analysis has been hindered by the difficulties with poor signal quality and the difficulties in applying the specialised knowledge required for interpreting ECG patterns, in association with other events in labour, in an objective way. A fundamental investigation and development of optimal signal enhancement techniques that maximise the available information in the ECG signal, along with different techniques for detecting individual waveforms from poor quality signals, has been carried out. To automate the visual interpretation of the ECG waveform, novel techniques have been developed that allow reliable extraction of key features and hence allow a detailed ECG waveform analysis. Fuzzy logic is used to automatically classify the ECG waveform shape using these features by using knowledge that was elicited from expert sources and derived from example data. This allows the subtle changes in the ECG waveform to be automatically detected in relation to other events in labour, and thus improve the clinicians position for making an accurate diagnosis. To ensure the interpretation is based on reliable information and takes place in the proper context, a new and sensitive index for assessing the quality of the ECG has been developed. New techniques to capture, for the first time in machine form, the clinical expertise / guidelines for electronic foetal monitoring have been developed based on fuzzy logic and finite state machines, The software model provides a flexible framework to further develop and optimise rules for ECG pattern analysis. The signal enhancement, QRS detection and pattern recognition of important ECG waveform shapes have had extensive testing and results are presented. Results show that no significant loss of information is incurred as a result of the signal enhancement and feature extraction techniques

GENETIC FUZZY FILTER BASED ON MAD AND ROAD TO REMOVE MIXED IMPULSE NOISE

In this thesis, a genetic fuzzy image filtering based on rank-ordered absolute differences (ROAD) and median of the absolute deviations from the median (MAD) is proposed. The proposed method consists of three components, including fuzzy noise detection system, fuzzy switching scheme filtering, and fuzzy parameters optimization using genetic algorithms (GA) to perform efficient and effective noise removal. Our idea is to utilize MAD and ROAD as measures of noise probability of a pixel. Fuzzy inference system is used to justify the degree of which a pixel can be categorized as noisy. Based on the fuzzy inference result, the fuzzy switching scheme that adopts median filter as the main estimator is applied to the filtering. The GA training aims to find the best parameters for the fuzzy sets in the fuzzy noise detection. From the experimental results, the proposed method has successfully removed mixed impulse noise in low to medium probabilities, while keeping the uncorrupted pixels less affected by the median filtering. It also surpasses the other methods, either classical or soft computing-based approaches to impulse noise removal, in MAE and PSNR evaluations. It can also remove salt-and-pepper and uniform impulse noise well

Noise-Enhanced and Human Visual System-Driven Image Processing: Algorithms and Performance Limits

This dissertation investigates the problem of image processing based on stochastic resonance (SR) noise and human visual system (HVS) properties, where several novel frameworks and algorithms for object detection in images, image enhancement and image segmentation as well as the method to estimate the performance limit of image segmentation algorithms are developed. Object detection in images is a fundamental problem whose goal is to make a decision if the object of interest is present or absent in a given image. We develop a framework and algorithm to enhance the detection performance of suboptimal detectors using SR noise, where we add a suitable dose of noise into the original image data and obtain the performance improvement. Micro-calcification detection is employed in this dissertation as an illustrative example. The comparative experiments with a large number of images verify the efficiency of the presented approach. Image enhancement plays an important role and is widely used in various vision tasks. We develop two image enhancement approaches. One is based on SR noise, HVS-driven image quality evaluation metrics and the constrained multi-objective optimization (MOO) technique, which aims at refining the existing suboptimal image enhancement methods. Another is based on the selective enhancement framework, under which we develop several image enhancement algorithms. The two approaches are applied to many low quality images, and they outperform many existing enhancement algorithms. Image segmentation is critical to image analysis. We present two segmentation algorithms driven by HVS properties, where we incorporate the human visual perception factors into the segmentation procedure and encode the prior expectation on the segmentation results into the objective functions through Markov random fields (MRF). Our experimental results show that the presented algorithms achieve higher segmentation accuracy than many representative segmentation and clustering algorithms available in the literature. Performance limit, or performance bound, is very useful to evaluate different image segmentation algorithms and to analyze the segmentability of the given image content. We formulate image segmentation as a parameter estimation problem and derive a lower bound on the segmentation error, i.e., the mean square error (MSE) of the pixel labels considered in our work, using a modified Cramér-Rao bound (CRB). The derivation is based on the biased estimator assumption, whose reasonability is verified in this dissertation. Experimental results demonstrate the validity of the derived bound

Design of a High-Speed Architecture for Stabilization of Video Captured Under Non-Uniform Lighting Conditions

Video captured in shaky conditions may lead to vibrations. A robust algorithm to immobilize the video by compensating for the vibrations from physical settings of the camera is presented in this dissertation. A very high performance hardware architecture on Field Programmable Gate Array (FPGA) technology is also developed for the implementation of the stabilization system. Stabilization of video sequences captured under non-uniform lighting conditions begins with a nonlinear enhancement process. This improves the visibility of the scene captured from physical sensing devices which have limited dynamic range. This physical limitation causes the saturated region of the image to shadow out the rest of the scene. It is therefore desirable to bring back a more uniform scene which eliminates the shadows to a certain extent. Stabilization of video requires the estimation of global motion parameters. By obtaining reliable background motion, the video can be spatially transformed to the reference sequence thereby eliminating the unintended motion of the camera. A reflectance-illuminance model for video enhancement is used in this research work to improve the visibility and quality of the scene. With fast color space conversion, the computational complexity is reduced to a minimum. The basic video stabilization model is formulated and configured for hardware implementation. Such a model involves evaluation of reliable features for tracking, motion estimation, and affine transformation to map the display coordinates of a stabilized sequence. The multiplications, divisions and exponentiations are replaced by simple arithmetic and logic operations using improved log-domain computations in the hardware modules. On Xilinx\u27s Virtex II 2V8000-5 FPGA platform, the prototype system consumes 59% logic slices, 30% flip-flops, 34% lookup tables, 35% embedded RAMs and two ZBT frame buffers. The system is capable of rendering 180.9 million pixels per second (mpps) and consumes approximately 30.6 watts of power at 1.5 volts. With a 1024×1024 frame, the throughput is equivalent to 172 frames per second (fps). Future work will optimize the performance-resource trade-off to meet the specific needs of the applications. It further extends the model for extraction and tracking of moving objects as our model inherently encapsulates the attributes of spatial distortion and motion prediction to reduce complexity. With these parameters to narrow down the processing range, it is possible to achieve a minimum of 20 fps on desktop computers with Intel Core 2 Duo or Quad Core CPUs and 2GB DDR2 memory without a dedicated hardware

Towards An Intelligent Fuzzy Based Multimodal Two Stage Speech Enhancement System

This thesis presents a novel two stage multimodal speech enhancement system, making use of both visual and audio information to filter speech, and explores the extension of this system with the use of fuzzy logic to demonstrate proof of concept for an envisaged autonomous, adaptive, and context aware multimodal system. The design of the proposed cognitively inspired framework is scalable, meaning that it is possible for the techniques used in individual parts of the system to be upgraded and there is scope for the initial framework presented here to be expanded. In the proposed system, the concept of single modality two stage filtering is extended to include the visual modality. Noisy speech information received by a microphone array is first pre-processed by visually derived Wiener filtering employing the novel use of the Gaussian Mixture Regression (GMR) technique, making use of associated visual speech information, extracted using a state of the art Semi Adaptive Appearance Models (SAAM) based lip tracking approach. This pre-processed speech is then enhanced further by audio only beamforming using a state of the art Transfer Function Generalised Sidelobe Canceller (TFGSC) approach. This results in a system which is designed to function in challenging noisy speech environments (using speech sentences with different speakers from the GRID corpus and a range of noise recordings), and both objective and subjective test results (employing the widely used Perceptual Evaluation of Speech Quality (PESQ) measure, a composite objective measure, and subjective listening tests), showing that this initial system is capable of delivering very encouraging results with regard to filtering speech mixtures in difficult reverberant speech environments. Some limitations of this initial framework are identified, and the extension of this multimodal system is explored, with the development of a fuzzy logic based framework and a proof of concept demonstration implemented. Results show that this proposed autonomous,adaptive, and context aware multimodal framework is capable of delivering very positive results in difficult noisy speech environments, with cognitively inspired use of audio and visual information, depending on environmental conditions. Finally some concluding remarks are made along with proposals for future work

Fuzzy metrics and fuzzy logic for colour image filtering

El filtrado de imagen es una tarea fundamental para la mayoría de los sistemas de visión por computador cuando las imágenes se usan para análisis automático o, incluso, para inspección humana. De hecho, la presencia de ruido en una imagen puede ser un grave impedimento para las sucesivas tareas de procesamiento de imagen como, por ejemplo, la detección de bordes o el reconocimiento de patrones u objetos y, por lo tanto, el ruido debe ser reducido. En los últimos años el interés por utilizar imágenes en color se ha visto incrementado de forma significativa en una gran variedad de aplicaciones. Es por esto que el filtrado de imagen en color se ha convertido en un área de investigación interesante. Se ha observado ampliamente que las imágenes en color deben ser procesadas teniendo en cuenta la correlación existente entre los distintos canales de color de la imagen. En este sentido, la solución probablemente más conocida y estudiada es el enfoque vectorial. Las primeras soluciones de filtrado vectorial, como por ejemplo el filtro de mediana vectorial (VMF) o el filtro direccional vectorial (VDF), se basan en la teoría de la estadística robusta y, en consecuencia, son capaces de realizar un filtrado robusto. Desafortunadamente, estas técnicas no se adaptan a las características locales de la imagen, lo que implica que usualmente los bordes y detalles de las imágenes se emborronan y pierden calidad. A fin de solventar este problema, varios filtros vectoriales adaptativos se han propuesto recientemente. En la presente Tesis doctoral se han llevado a cabo dos tareas principales: (i) el estudio de la aplicabilidad de métricas difusas en tareas de procesamiento de imagen y (ii) el diseño de nuevos filtros para imagen en color que sacan provecho de las propiedades de las métricas difusas y la lógica difusa. Los resultados experimentales presentados en esta Tesis muestran que las métricas difusas y la lógica difusa son herramientas útiles para diseñar técnicas de filtrado,Morillas Gómez, S. (2007). Fuzzy metrics and fuzzy logic for colour image filtering [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/1879Palanci