MAPPING FOREST STRUCTURE AND HABITAT CHARACTERISTICS USING LIDAR AND MULTI-SENSOR FUSION

This dissertation explored the combined use of lidar and other remote sensing data for improved forest structure and habitat mapping. The objectives were to quantify aboveground biomass and canopy dynamics and map habitat characteristics with lidar and /or fusion approaches. Structural metrics from lidar and spectral characteristics from hyperspectral data were combined for improving biomass estimates in the Sierra Nevada, California. Addition of hyperspectral metrics only marginally improved biomass estimates from lidar, however, predictions from lidar after species stratification of field data improved by 12%. Spatial predictions from lidar after species stratification of hyperspectral data also had lower errors suggesting this could be viable method for mapping biomass at landscape level. A combined analysis of the two datasets further showed that fusion could have considerably more value in understanding ecosystem and habitat characteristics. The second objective was to quantify canopy height and biomass changes in in the Sierra Nevada using lidar data acquired in 1999 and 2008. Direct change detection showed overall statistically significant positive height change at footprint level (ΔRH100 = 0.69 m, +/- 7.94 m). Across the landscape, ~20 % of height and biomass changes were significant with more than 60% being positive, suggesting regeneration from past disturbances and a small net carbon sink. This study added further evidence to the capabilities of waveform lidar in mapping canopy dynamics while highlighting the need for error analysis and rigorous field validation Lastly, fusion applications for habitat mapping were tested with radar, lidar and multispectral data in the Hubbard Brook Experimental Forest, New Hampshire. A suite of metrics from each dataset was used to predict multi-year presence for eight migratory songbirds with data mining methods. Results showed that fusion improved predictions for all datasets, with more than 25% improvement from radar alone. Spatial predictions from fusion were also consistent with known habitat preferences for the birds demonstrating the potential of multi- sensor fusion in mapping habitat characteristics. The main contribution of this research was an improved understanding of lidar and multi-sensor fusion approaches for applications in carbon science and habitat studies

Using Remote Sensing to Characterize Disturbance during a Severe Drought in the Sierra Nevada

Between 2012 and 2016, California experienced an extreme period of drought and high temperatures. During this period there were two particularly notable disturbances in the southern Sierra Nevada. In 2013, the first major disturbance occurred in the form of the Rim Fire. At 1,041 km2, the Rim Fire is the largest fire ever recorded in the Sierra Nevada. Throughout the drought, but particularly in the latter years, there was also epidemic levels of tree mortality, particularly mortality tied to native bark beetles (Dendroctonus spp.) killing pines (Pinus spp.).Using the southern Sierra Nevada as a case study, I investigated the novel insights a next-generation imaging spectroscopy satellite would be able to give in understanding fire and tree mortality globally. Specifically, I showed the potential for imaging spectroscopy based spectral mixture analysis (SMA) as an assessment of fire severity. SMA cover fractions allow for a remotely sensed fire severity metric that would be more readily compared at the global level than those currently in use, such as difference normalized burn ratio (dNBR). I also demonstrated that using the random forest machine learning algorithm, a simulated spaceborne imaging spectrometer would be able to more accurately identify the location of red stage tree mortality compared to existing multispectral satellites such as Landsat. In addition, remote sensing was used to gain an understanding of the impact and drivers of tree mortality. For a 2,240 ha watershed, a model of tree crown locations, with species and height identified, was created based on a combination of high spatial resolution airborne imaging spectroscopy and lidar. Then, high-resolution multispectral imagery was interpreted to determine a tree’s 2016 status. In the area investigated, the net effect of the drought was to reduce the number of live conifer stems taller than 15 m at the crown level by 75%, primarily due to the death of ponderosa pine. Finally, the factors that distinguished conifers that were alive in 2016 from conifers that died between 2015 and 2016, both within the 2,240 ha watershed and across the southern Sierra Nevada were examined. Trees that survived were typically associated with being located in stands with tree species and height class heterogeneity. Stands in wetter, cooler parts of the Sierra Nevada during the drought were also more likely to survive

Laser vision : lidar as a transformative tool to advance critical zone science

© The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hydrology and Earth System Sciences 19 (2015): 2881-2897, doi:10.5194/hess-19-2881-2015.Observation and quantification of the Earth's surface is undergoing a revolutionary change due to the increased spatial resolution and extent afforded by light detection and ranging (lidar) technology. As a consequence, lidar-derived information has led to fundamental discoveries within the individual disciplines of geomorphology, hydrology, and ecology. These disciplines form the cornerstones of critical zone (CZ) science, where researchers study how interactions among the geosphere, hydrosphere, and biosphere shape and maintain the "zone of life", which extends from the top of unweathered bedrock to the top of the vegetation canopy. Fundamental to CZ science is the development of transdisciplinary theories and tools that transcend disciplines and inform other's work, capture new levels of complexity, and create new intellectual outcomes and spaces. Researchers are just beginning to use lidar data sets to answer synergistic, transdisciplinary questions in CZ science, such as how CZ processes co-evolve over long timescales and interact over shorter timescales to create thresholds, shifts in states and fluxes of water, energy, and carbon. The objective of this review is to elucidate the transformative potential of lidar for CZ science to simultaneously allow for quantification of topographic, vegetative, and hydrological processes. A review of 147 peer-reviewed lidar studies highlights a lack of lidar applications for CZ studies as 38 % of the studies were focused in geomorphology, 18 % in hydrology, 32 % in ecology, and the remaining 12 % had an interdisciplinary focus. A handful of exemplar transdisciplinary studies demonstrate lidar data sets that are well-integrated with other observations can lead to fundamental advances in CZ science, such as identification of feedbacks between hydrological and ecological processes over hillslope scales and the synergistic co-evolution of landscape-scale CZ structure due to interactions amongst carbon, energy, and water cycles. We propose that using lidar to its full potential will require numerous advances, including new and more powerful open-source processing tools, exploiting new lidar acquisition technologies, and improved integration with physically based models and complementary in situ and remote-sensing observations. We provide a 5-year vision that advocates for the expanded use of lidar data sets and highlights subsequent potential to advance the state of CZ science.The workshop forming the impetus for this paper was funded by the National Science Foundation (EAR 1406031). Additional funding for the workshop and planning was provided to S. W. Lyon by the Swedish Foundation for International Cooperation in Research and Higher Education (STINT grant no. 2013-5261). A. A. Harpold was supported by an NSF fellowship (EAR 1144894)

Lidar Remote Sensing of Vertical Foliage Profile and Leaf Area Index

Leaf Area Index (LAI) and Vertical Foliage Profile (VFP) are among the most important forest structural parameters, and characterization of those parameters in high biomass forests remains a major challenge in passive remote sensing due to signal saturation problem. Recently an active remote sensing technology, light detection and ranging (lidar), has shown a great promise in this task recognizing its accuracy in measuring aboveground biomass and canopy height. This dissertation further expands current application of lidar on ecosystem monitoring, and explores the capacity of deriving LAI and VFP from lidar data in particular. The overall goal of this study is to derive large scale forest LAI and VFP using data from the Geoscience Laser Altimeter System (GLAS) on board of ICESat, and provide a framework of validating such LAI products from plot level to global scale. To achieve this goal, a physically based Geometry Optical and Radiative Transfer (GORT) model was first developed using high quality airborne waveform lidar data over a tropical rainforest in La Selva, Costa Rica. The excellent agreement between lidar data and field destructively sampled data demonstrated the effectiveness of the Lidar-LAI model and suggested large footprint waveform lidar can provide accurate vertical LAI profile estimates that do not saturate even at the highest possible LAI levels. Next, an intercomparative study of ground-based, airborne and spaceborne retrievals of total LAI was conducted over the conifer-dominated forests of Sierra Nevada in California. Good relationships were discovered in their comparisons, following a scaling-up validation strategy where ground-based LAI observations were related to aircraft observations of LAI, which in turn were used to validate GLAS LAI derived from coincident data. Successful implementation of this strategy can pave the way for the future recovery of vertical LAI profiles globally. LAI and VFP products were then derived over both the entire state of California and Contiguous United States as an efficacy demonstration of the method. These products were the first ever attempts to obtain large scale estimates of LAI and VFP from lidar observations. Such forest structural measurement can be used not only to quantify carbon stock and flux of terrestrial ecosystem, but also to provide spatial information of specie abundance in biodiversity. Results from this study can also greatly help broaden scientific applications of future spaceborne lidar missions (e.g. ICESat-2 and GEDI)

Laser Vision: Lidar as a Transformative Tool to Advance Critical Zone Science

Observation and quantification of the Earth’s surface is undergoing a revolutionary change due to the increased spatial resolution and extent afforded by light detection and ranging (lidar) technology. As a consequence, lidar-derived information has led to fundamental discoveries within the individual disciplines of geomorphology, hydrology, and ecology. These disciplines form the cornerstones of critical zone (CZ) science, where researchers study how interactions among the geosphere, hydrosphere, and biosphere shape and maintain the “zone of life”, which extends from the top of unweathered bedrock to the top of the vegetation canopy. Fundamental to CZ science is the development of transdisciplinary theories and tools that transcend disciplines and inform other’s work, capture new levels of complexity, and create new intellectual outcomes and spaces. Researchers are just beginning to use lidar data sets to answer synergistic, transdisciplinary questions in CZ science, such as how CZ processes co-evolve over long timescales and interact over shorter timescales to create thresholds, shifts in states and fluxes of water, energy, and carbon. The objective of this review is to elucidate the transformative potential of lidar for CZ science to simultaneously allow for quantification of topographic, vegetative, and hydrological processes. A review of 147 peer-reviewed lidar studies highlights a lack of lidar applications for CZ studies as 38% of the studies were focused in geomorphology, 18% in hydrology, 32% in ecology, and the remaining 12% had an interdisciplinary focus. A handful of exemplar transdisciplinary studies demonstrate lidar data sets that are well-integrated with other observations can lead to fundamental advances in CZ science, such as identification of feedbacks between hydrological and ecological processes over hillslope scales and the synergistic co-evolution of landscape-scale CZ structure due to interactions amongst carbon, energy, and water cycles. We propose that using lidar to its full potential will require numerous advances, including new and more powerful open-source processing tools, exploiting new lidar acquisition technologies, and improved integration with physically based models and complementary in situ and remote-sensing observations. We provide a 5-year vision that advocates for the expanded use of lidar data sets and highlights subsequent potential to advance the state of CZ science

The global tree carrying capacity (keynote)

editorial reviewe

Advancing the Monitoring Capabilities of Mountain Snowpack Fluctuations at Various Spatial and Temporal Scales

Snow is a critical water resource for the western US and many regions across the globe. However, our ability to accurately monitor changes in snow mass from satellite remote sensing, specifically its water equivalent, remains a challenge in mountain regions. No single sensor currently has the ability to directly measure snow water equivalent (SWE) from space at a spatial scale suitable for water supply forecasting in mountain environments. This knowledge gap calls for the innovative use of remote sensing techniques, computational tools, and data science methods to advance our ability to estimate mountain snowpacks across a range of spatial and temporal scales. The goal of this dissertation is to advance our capabilities for understanding snowpack across watershed-relevant spatial and temporal scales. Two research approaches were used to accomplish this goal: quantifying the physiographic controls and sensitivities of hydrologically important snow metrics and progressing our ability to use L-band interferometric synthetic aperture radar (InSAR) to measure SWE changes. First, we quantify the physiographic controls and various snowpack metrics in the Sierra Nevada using a novel gridded SWE reanalysis dataset. Such work demonstrates the complexity of snowpack processes and the need for fine-resolution snowpack information. Next, using L-band Interferometric Synthetic Aperture Radar (InSAR) from the NASA SnowEx campaign, both snow ablation and accumulation are estimated in the Jemez Mountains, NM. The radar-derived retrievals are evaluated utilizing a combination of optical snow-cover data, snow pits, meteorological station data, in situ snow depth sensors, and ground-penetrating radar (GPR). Lastly, we compare multisensor optical-radar approaches for SWE retrievals and find that moderate-resolution legacy satellite products provide sufficient results. The results of this work show that L-band InSAR is a suitable technique for global SWE monitoring when used synergistically with optical SCA data and snowpack modeling. While two distinctive methods are present in this research, they both work towards advancing our ability to understand the dynamics of mountain snowpack

Determination of Structural Characteristics of Old-Growth Forest in Ukraine Using Spaceborne LiDAR

A forest’s structure changes as it progresses through developmental stages from establishment to old-growth forest. Therefore, the vertical structure of old-growth forests will differ from that of younger, managed forests. Free, publicly available spaceborne Laser Range and Detection (LiDAR) data designed for the determination of forest structure has recently become available through NASA’s General Ecosystem and Development Investigation (GEDI). We use this data to investigate the structure of some of the largest remaining old-growth forests in Europe in the Ukrainian Carpathian Mountains. We downloaded 18489 cloud-free shots in the old-growth forest (OGF) and 20398 shots in adjacent non-OGF areas during leaf-on, snow-free conditions. We found significant differences between OGF and non-OGF over a wide range of structural metrics. OGF was significantly more open, with a more complex vertical structure and thicker ground-layer vegetation. We used Random Forest classification on a range of GEDI-derived metrics to classify OGF shapefiles with an accuracy of 73%. Our work demonstrates the use of spaceborne LiDAR for the identification of old-growth forests

LINKING ALLOMETRIC SCALING THEORY WITH LIDAR REMOTE SENSING FOR IMPROVED BIOMASS ESTIMATION AND ECOSYSTEM CHARACTERIZATION

Accurate quantification of forest carbon stocks and fluxes is critical for the successful modeling and mitigation of climate change. This research focuses on forest carbon stock quantification, both in terms of testing emerging remote sensing approaches to forest carbon modeling, and examining allometric equations used to estimate biomass stocks in field plots. First, we test controversial theoretical predictions of forest allometry through the mapping of the allometric variability using field plots across the U.S. we find that there is considerable variability in forest allometry across space, largely driven by local environment and life history. However, in tall forests, allometries tend to converge toward theoretical predictions, suggesting that theory may be a useful constraint on allometry in certain forests. Second, we shift to an analysis of empirical allometries by developing an algorithm to extract individual crown information from forest systems and using it for biomass mapping and allometric equation testing. Third, we test whether individual tree structure bolsters biomass modeling capabilities in comparison to tradition, plot-aggregated LiDAR metrics. As part of this analysis we also test an allometric scaling-based approach to biomass mapping. We find that individual tree-level structure only improves biomass models when there is considerable spatial heterogeneity in the forest. Also, allometric scaling-based only worked in one study site, and failed in the other two sites because there was little or no relationship between basal area and maximum canopy height. Finally, we applied LiDAR datasets to an analysis of the effects of sample size on empirical allometry development. We found that small samples sizes tend to result in an under sampling of large stems, which yields a more linear fit than the true allometry. An assessment of the potential carbon implications of this problem yielded site-level biomass predictions with biases of 10-178%. We suggest that empirical allometric equations developed on small sample sizes, as applied in the U.S., yield potentially large errors in biomass and therefore require careful reassessment. In combination with our findings regarding the spatial variability of forest allometry, we believe that the limiting factor to forest carbon estimation is the use of allometric equations