6,203 research outputs found
Large induced subgraphs via triangulations and CMSO
We obtain an algorithmic meta-theorem for the following optimization problem.
Let \phi\ be a Counting Monadic Second Order Logic (CMSO) formula and t be an
integer. For a given graph G, the task is to maximize |X| subject to the
following: there is a set of vertices F of G, containing X, such that the
subgraph G[F] induced by F is of treewidth at most t, and structure (G[F],X)
models \phi.
Some special cases of this optimization problem are the following generic
examples. Each of these cases contains various problems as a special subcase:
1) "Maximum induced subgraph with at most l copies of cycles of length 0
modulo m", where for fixed nonnegative integers m and l, the task is to find a
maximum induced subgraph of a given graph with at most l vertex-disjoint cycles
of length 0 modulo m.
2) "Minimum \Gamma-deletion", where for a fixed finite set of graphs \Gamma\
containing a planar graph, the task is to find a maximum induced subgraph of a
given graph containing no graph from \Gamma\ as a minor.
3) "Independent \Pi-packing", where for a fixed finite set of connected
graphs \Pi, the task is to find an induced subgraph G[F] of a given graph G
with the maximum number of connected components, such that each connected
component of G[F] is isomorphic to some graph from \Pi.
We give an algorithm solving the optimization problem on an n-vertex graph G
in time O(#pmc n^{t+4} f(t,\phi)), where #pmc is the number of all potential
maximal cliques in G and f is a function depending of t and \phi\ only. We also
show how a similar running time can be obtained for the weighted version of the
problem. Pipelined with known bounds on the number of potential maximal
cliques, we deduce that our optimization problem can be solved in time
O(1.7347^n) for arbitrary graphs, and in polynomial time for graph classes with
polynomial number of minimal separators
On the Enumeration of all Minimal Triangulations
We present an algorithm that enumerates all the minimal triangulations of a
graph in incremental polynomial time. Consequently, we get an algorithm for
enumerating all the proper tree decompositions, in incremental polynomial time,
where "proper" means that the tree decomposition cannot be improved by removing
or splitting a bag
Potential Maximal Clique Algorithms for Perfect Phylogeny Problems
Kloks, Kratsch, and Spinrad showed how treewidth and minimum-fill, NP-hard
combinatorial optimization problems related to minimal triangulations, are
broken into subproblems by block subgraphs defined by minimal separators. These
ideas were expanded on by Bouchitt\'e and Todinca, who used potential maximal
cliques to solve these problems using a dynamic programming approach in time
polynomial in the number of minimal separators of a graph. It is known that
solutions to the perfect phylogeny problem, maximum compatibility problem, and
unique perfect phylogeny problem are characterized by minimal triangulations of
the partition intersection graph. In this paper, we show that techniques
similar to those proposed by Bouchitt\'e and Todinca can be used to solve the
perfect phylogeny problem with missing data, the two- state maximum
compatibility problem with missing data, and the unique perfect phylogeny
problem with missing data in time polynomial in the number of minimal
separators of the partition intersection graph
The role of twins in computing planar supports of hypergraphs
A support or realization of a hypergraph is a graph on the same
vertex as such that for each hyperedge of it holds that its vertices
induce a connected subgraph of . The NP-hard problem of finding a planar}
support has applications in hypergraph drawing and network design. Previous
algorithms for the problem assume that twins}---pairs of vertices that are in
precisely the same hyperedges---can safely be removed from the input
hypergraph. We prove that this assumption is generally wrong, yet that the
number of twins necessary for a hypergraph to have a planar support only
depends on its number of hyperedges. We give an explicit upper bound on the
number of twins necessary for a hypergraph with hyperedges to have an
-outerplanar support, which depends only on and . Since all
additional twins can be safely removed, we obtain a linear-time algorithm for
computing -outerplanar supports for hypergraphs with hyperedges if
and are constant; in other words, the problem is fixed-parameter
linear-time solvable with respect to the parameters and
Covering Small Independent Sets and Separators with Applications to Parameterized Algorithms
We present two new combinatorial tools for the design of parameterized
algorithms. The first is a simple linear time randomized algorithm that given
as input a -degenerate graph and an integer , outputs an independent
set , such that for every independent set in of size at most ,
the probability that is a subset of is at least .The second is a new (deterministic) polynomial
time graph sparsification procedure that given a graph , a set of terminal pairs and an
integer , returns an induced subgraph of that maintains all
the inclusion minimal multicuts of of size at most , and does not
contain any -vertex connected set of size . In
particular, excludes a clique of size as a
topological minor. Put together, our new tools yield new randomized fixed
parameter tractable (FPT) algorithms for Stable - Separator, Stable Odd
Cycle Transversal and Stable Multicut on general graphs, and for Stable
Directed Feedback Vertex Set on -degenerate graphs, resolving two problems
left open by Marx et al. [ACM Transactions on Algorithms, 2013]. All of our
algorithms can be derandomized at the cost of a small overhead in the running
time.Comment: 35 page
- …