Finding High-Dimensional D-OptimalDesigns for Logistic Models via Differential Evolution

D-optimal designs are frequently used in controlled experiments to obtain the most accurateestimate of model parameters at minimal cost. Finding them can be a challenging task, especially whenthere are many factors in a nonlinear model. As the number of factors becomes large and interact withone another, there are many more variables to optimize and the D-optimal design problem becomes highdimensionaland non-separable. Consequently, premature convergence issues arise. Candidate solutions gettrapped in local optima and the classical gradient-based optimization approaches to search for the D-optimaldesigns rarely succeed. We propose a specially designed version of differential evolution (DE) which is arepresentative gradient-free optimization approach to solve such high-dimensional optimization problems.The proposed specially designed DE uses a new novelty-based mutation strategy to explore the variousregions in the search space. The exploration of the regions will be carried out differently from the previouslyexplored regions and the diversity of the population can be preserved. The proposed novelty-based mutationstrategy is collaborated with two common DE mutation strategies to balance exploration and exploitationat the early or medium stage of the evolution. Additionally, we adapt the control parameters of DE as theevolution proceeds. Using logistic models with several factors on various design spaces as examples, oursimulation results show our algorithm can find D-optimal designs efficiently and the algorithm outperformsits competitors. As an application, we apply our algorithm and re-design a 10-factor car refueling experimentwith discrete and continuous factors and selected pairwise interactions. Our proposed algorithm was able toconsistently outperform the other algorithms and find a more efficient D-optimal design for the problem

A comparison of general-purpose optimization algorithms forfinding optimal approximate experimental designs

Several common general purpose optimization algorithms are compared for findingA- and D-optimal designs for different types of statistical models of varying complexity,including high dimensional models with five and more factors. The algorithms of interestinclude exact methods, such as the interior point method, the Nelder–Mead method, theactive set method, the sequential quadratic programming, and metaheuristic algorithms,such as particle swarm optimization, simulated annealing and genetic algorithms.Several simulations are performed, which provide general recommendations on theutility and performance of each method, including hybridized versions of metaheuristicalgorithms for finding optimal experimental designs. A key result is that general-purposeoptimization algorithms, both exact methods and metaheuristic algorithms, perform wellfor finding optimal approximate experimental designs

A Metaheuristic Adaptive Cubature Based Algorithm to Find Bayesian Optimal Designs for Nonlinear Models

Finding Bayesian optimal designs for nonlinear models is a difficult task because the optimality criteriontypically requires us to evaluate complex integrals before we perform a constrained optimization. Wepropose a hybridized method where we combine an adaptive multidimensional integration algorithm anda metaheuristic algorithm called imperialist competitive algorithm to find Bayesian optimal designs. Weapply our numerical method to a few challenging design problems to demonstrate its efficiency. Theyinclude finding D-optimal designs for an item response model commonly used in education, Bayesianoptimal designs for survivalmodels, and Bayesian optimal designs for a four-parameter sigmoid Emax doseresponse model. Supplementary materials for this article are available online and they contain an R packagefor implementing the proposed algorithm and codes for reproducing all the results in this paper

Metaheuristic Algorithms in Artificial Intelligence with Applications to Bioinformatics, Biostatistics, Ecology and, the Manufacturing Industries

Nature-inspired metaheuristic algorithms are important components of artificial intelligence, and are increasingly used across disciplines to tackle various types of challenging optimization problems. We apply a newly proposed nature-inspired metaheuristic algorithm called competitive swarm optimizer with mutated agents (CSO-MA) and demonstrate its flexibility and out-performance relative to its competitors in a variety of optimization problems in the statistical sciences. In particular, we show the algorithm is efficient and can incorporate various cost structures or multiple user-specified nonlinear constraints. Our applications include (i) finding maximum likelihood estimates of parameters in a single cell generalized trend model to study pseudotime in bioinformatics, (ii) estimating parameters in a commonly used Rasch model in education research, (iii) finding M-estimates for a Cox regression in a Markov renewal model and (iv) matrix completion to impute missing values in a two compartment model. In addition we discuss applications to (v) select variables optimally in an ecology problem and (vi) design a car refueling experiment for the auto industry using a logistic model with multiple interacting factors

VI Workshop on Computational Data Analysis and Numerical Methods: Book of Abstracts

The VI Workshop on Computational Data Analysis and Numerical Methods (WCDANM) is going to be held on June 27-29, 2019, in the Department of Mathematics of the University of Beira Interior (UBI), Covilhã, Portugal and it is a unique opportunity to disseminate scientific research related to the areas of Mathematics in general, with particular relevance to the areas of Computational Data Analysis and Numerical Methods in theoretical and/or practical field, using new techniques, giving especial emphasis to applications in Medicine, Biology, Biotechnology, Engineering, Industry, Environmental Sciences, Finance, Insurance, Management and Administration. The meeting will provide a forum for discussion and debate of ideas with interest to the scientific community in general. With this meeting new scientific collaborations among colleagues, namely new collaborations in Masters and PhD projects are expected. The event is open to the entire scientific community (with or without communication/poster)

Unconventional machine learning of genome-wide human cancer data

Recent advances in high-throughput genomic technologies coupled with exponential increases in computer processing and memory have allowed us to interrogate the complex aberrant molecular underpinnings of human disease from a genome-wide perspective. While the deluge of genomic information is expected to increase, a bottleneck in conventional high-performance computing is rapidly approaching. Inspired in part by recent advances in physical quantum processors, we evaluated several unconventional machine learning (ML) strategies on actual human tumor data. Here we show for the first time the efficacy of multiple annealing-based ML algorithms for classification of high-dimensional, multi-omics human cancer data from the Cancer Genome Atlas. To assess algorithm performance, we compared these classifiers to a variety of standard ML methods. Our results indicate the feasibility of using annealing-based ML to provide competitive classification of human cancer types and associated molecular subtypes and superior performance with smaller training datasets, thus providing compelling empirical evidence for the potential future application of unconventional computing architectures in the biomedical sciences

Pyramid: Enhancing Selectivity in Big Data Protection with Count Featurization

Protecting vast quantities of data poses a daunting challenge for the growing number of organizations that collect, stockpile, and monetize it. The ability to distinguish data that is actually needed from data collected "just in case" would help these organizations to limit the latter's exposure to attack. A natural approach might be to monitor data use and retain only the working-set of in-use data in accessible storage; unused data can be evicted to a highly protected store. However, many of today's big data applications rely on machine learning (ML) workloads that are periodically retrained by accessing, and thus exposing to attack, the entire data store. Training set minimization methods, such as count featurization, are often used to limit the data needed to train ML workloads to improve performance or scalability. We present Pyramid, a limited-exposure data management system that builds upon count featurization to enhance data protection. As such, Pyramid uniquely introduces both the idea and proof-of-concept for leveraging training set minimization methods to instill rigor and selectivity into big data management. We integrated Pyramid into Spark Velox, a framework for ML-based targeting and personalization. We evaluate it on three applications and show that Pyramid approaches state-of-the-art models while training on less than 1% of the raw data

Decision support for build-to-order supply chain management through multiobjective optimization

This is the post-print version of the final paper published in International Journal of Production Economics. The published article is available from the link below. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. Copyright @ 2010 Elsevier B.V.This paper aims to identify the gaps in decision-making support based on multiobjective optimization (MOO) for build-to-order supply chain management (BTO-SCM). To this end, it reviews the literature available on modelling build-to-order supply chains (BTO-SC) with the focus on adopting MOO techniques as a decision support tool. The literature has been classified based on the nature of the decisions in different part of the supply chain, and the key decision areas across a typical BTO-SC are discussed in detail. Available software packages suitable for supporting decision making in BTO supply chains are also identified and their related solutions are outlined. The gap between the modelling and optimization techniques developed in the literature and the decision support needed in practice are highlighted. Future research directions to better exploit the decision support capabilities of MOO are proposed. These include: reformulation of the extant optimization models with a MOO perspective, development of decision supports for interfaces not involving manufacturers, development of scenarios around service-based objectives, development of efficient solution tools, considering the interests of each supply chain party as a separate objective to account for fair treatment of their requirements, and applying the existing methodologies on real-life data sets.Brunel Research Initiative and Enterprise Fund (BRIEF