Supporting Virtual Software Projects on the Web

A growing share of all software development project work is being done by geographically distributed teams. To satisfy shorter product design cycles, expert team members for a development project may need to be r ecruited globally. Yet to avoid extensive travelling or r eplacement costs, distributed project work is preferred. Current-generation software engineering tools and ass ociated systems, processes, and methods were for the most part developed to be used within a single enterprise. Major innovations have lately been introduced to enable groupware applications on the Internet to support global collaboration. However, their deployment for distributed software projects requires further research. In partic ular, groupware methods must seamlessly be integrated with project and product management systems to make them attractive for industry. In this position paper we outline the major challenges concerning distributed (virtual) software projects. Based on our experiences with software process modeling and enactment environments, we then propose approaches to solve those challenges

APQL: A process-model query language

As business process management technology matures, organisations acquire more and more business process models. The management of the resulting collections of process models poses real challenges. One of these challenges concerns model retrieval where support should be provided for the formulation and efficient execution of business process model queries. As queries based on only structural information cannot deal with all querying requirements in practice, there should be support for queries that require knowledge of process model semantics. In this paper we formally define a process model query language that is based on semantic relationships between tasks in process models and is independent of any particular process modelling notation

Compliance flow: an intelligent workflow management system to support engineering processes

This work is about extending the scope of current workflow management systems to support engineering processes. On the one hand engineering processes are relatively dynamic, and on the other their specification and performance are constrained by industry standards and guidelines for the sake of product acceptability, such as IEC 61508 for safety and ISO 9001 for quality. A number of technologies have been proposed to increase the adaptability of current workflow systems to deal with dynamic situations. A primary concern is how to support open-ended processes that cannot be completely specified in detail prior to their execution. A survey of adaptive workflow systems is given and the enabling technologies are discussed. Engineering processes are studied and their characteristics are identified and discussed. Current workflow systems have been successfully used in managing "administrative" processes for some time, but they lack the flexibility to support dynamic, unpredictable, collaborative, and highly interdependent engineering processes. [Continues.

Contextual Recommendations using Intention Mining on Process Traces

International audienceNowadays, digital traces are omnipresent in Information System (IS). Companies track IS interactions to retrieve and compile information about actors. Researchers of various streams, within IT and beyond, focused on recording actor interactions with systems and the technical possibilities to identify record and store these interactions. Tracing functionality has appeared in almost all common computer applications. This PhD project will focus on the establishment of a trace-based system and propose recommendations to actors regarding to their context. The objective of this thesis is to study process traces to propose recommendations to the actors by identifying a set of generic processes adaptable to the current actors' context. Thus, any actor, expert or novice, will be able to use this knowledge that gives contextual clues to identify the potential steps he could perform

A service to automate the task assignment process in YAWL

Master of ScienceDepartment of Computing and Information SciencesGurdip SinghDeveloping an optimal working environment and managing the of work load in an efficient manner are the major challenges for most businesses today. So, the importance of the workflow and workflow management in an organization is unquestionable. Many organizations use sophisticated systems to organize the workflows. One such workflow system based on a concise and powerful modeling language called “Yet Another Workflow Language” is YAWL. YAWL handles complex data, transformations, integration with organizational resources and Web Service integration. Workflow comprises of three main perspectives: control-flow, data and the resources. In Yawl, the control-flow and the data-flow are tightly coupled within the workflow enactment engine. But the resource perspective is provided by a discrete custom service called Resource Service. Administrative tools are provided using which the administrator has to manually select the resource (referred as participant) which needs to perform a particular task of the workflow. This project aims at developing a service which can automate the assignment of the tasks to the participants by using the Resource service which provides number of interfaces that expose the full functionality of the service. The application of this project with respect to Healthcare domain is presented. Healthcare domain is the one of the most demanding and yet critical business process. Hospitals face increasing pressure to both improve the quality of the services delivered to patients and to reduce costs .Hence there is significant demand on hospitals in regard to how the organization, execution, and monitoring of work processes is performed. Workflow Management Systems like YAWL offers a potential solution as they support processes by managing the flow of work

Process Calculi Abstractions for Biology

Several approaches have been proposed to model biological systems by means of the formal techniques and tools available in computer science. To mention just a few of them, some representations are inspired by Petri Nets theory, and some other by stochastic processes. A most recent approach consists in interpreting the living entities as terms of process calculi where the behavior of the represented systems can be inferred by applying syntax-driven rules. A comprehensive picture of the state of the art of the process calculi approach to biological modeling is still missing. This paper goes in the direction of providing such a picture by presenting a comparative survey of the process calculi that have been used and proposed to describe the behavior of living entities. This is the preliminary version of a paper that was published in Algorithmic Bioprocesses. The original publication is available at http://www.springer.com/computer/foundations/book/978-3-540-88868-

Fine-Grained Workflow Interoperability in Life Sciences

In den vergangenen Jahrzehnten führten Fortschritte in den Schlüsseltechnologien der Lebenswissenschaften zu einer exponentiellen Zunahme der zur Verfügung stehenden biologischen Daten. Um Ergebnisse zeitnah generieren zu können werden sowohl spezialisierte Rechensystem als auch Programmierfähigkeiten benötigt: Desktopcomputer oder monolithische Ansätze sind weder in der Lage mit dem Wachstum der verfügbaren biologischen Daten noch mit der Komplexität der Analysetechniken Schritt zu halten. Workflows erlauben diesem Trend durch Parallelisierungsansätzen und verteilten Rechensystemen entgegenzuwirken. Ihre transparenten Abläufe, gegeben durch ihre klar definierten Strukturen, ebenso ihre Wiederholbarkeit, erfüllen die Standards der Reproduzierbarkeit, welche an wissenschaftliche Methoden gestellt werden. Eines der Ziele unserer Arbeit ist es Forschern beim Bedienen von Rechensystemen zu unterstützen, ohne dass Programmierkenntnisse notwendig sind. Dafür wurde eine Sammlung von Tools entwickelt, welche jedes Kommandozeilenprogramm in ein Workflowsystem integrieren kann. Ohne weitere Anpassungen kann unser Programm zwei weit verbreitete Workflowsysteme unterstützen. Unser modularer Entwurf erlaubt zudem Unterstützung für weitere Workflowmaschinen hinzuzufügen. Basierend auf der Bedeutung von frühen und robusten Workflowentwürfen, haben wir außerdem eine wohl etablierte Desktop–basierte Analyseplattform erweitert. Diese enthält über 2.000 Aufgaben, wobei jede als Baustein in einem Workflow fungiert. Die Plattform erlaubt einfache Entwicklung neuer Aufgaben und die Integration externer Kommandozeilenprogramme. In dieser Arbeit wurde ein Plugin zur Konvertierung entwickelt, welches nutzerfreundliche Mechanismen bereitstellt, um Workflows auf verteilten Hochleistungsrechensystemen auszuführen—eine Aufgabe, die sonst technische Kenntnisse erfordert, die gewöhnlich nicht zum Anforderungsprofil eines Lebenswissenschaftlers gehören. Unsere Konverter–Erweiterung generiert quasi identische Versionen desselben Workflows, welche im Anschluss auf leistungsfähigen Berechnungsressourcen ausgeführt werden können. Infolgedessen werden nicht nur die Möglichkeiten von verteilten hochperformanten Rechensystemen sowie die Bequemlichkeit eines für Desktopcomputer entwickelte Workflowsystems ausgenutzt, sondern zusätzlich werden Berechnungsbeschränkungen von Desktopcomputern und die steile Lernkurve, die mit dem Workflowentwurf auf verteilten Systemen verbunden ist, umgangen. Unser Konverter–Plugin hat sofortige Anwendung für Forscher. Wir zeigen dies in drei für die Lebenswissenschaften relevanten Anwendungsbeispielen: Strukturelle Bioinformatik, Immuninformatik, und Metabolomik.Recent decades have witnessed an exponential increase of available biological data due to advances in key technologies for life sciences. Specialized computing resources and scripting skills are now required to deliver results in a timely fashion: desktop computers or monolithic approaches can no longer keep pace with neither the growth of available biological data nor the complexity of analysis techniques. Workflows offer an accessible way to counter against this trend by facilitating parallelization and distribution of computations. Given their structured and repeatable nature, workflows also provide a transparent process to satisfy strict reproducibility standards required by the scientific method. One of the goals of our work is to assist researchers in accessing computing resources without the need for programming or scripting skills. To this effect, we created a toolset able to integrate any command line tool into workflow systems. Out of the box, our toolset supports two widely–used workflow systems, but our modular design allows for seamless additions in order to support further workflow engines. Recognizing the importance of early and robust workflow design, we also extended a well–established, desktop–based analytics platform that contains more than two thousand tasks (each being a building block for a workflow), allows easy development of new tasks and is able to integrate external command line tools. We developed a converter plug–in that offers a user–friendly mechanism to execute workflows on distributed high–performance computing resources—an exercise that would otherwise require technical skills typically not associated with the average life scientist's profile. Our converter extension generates virtually identical versions of the same workflows, which can then be executed on more capable computing resources. That is, not only did we leverage the capacity of distributed high–performance resources and the conveniences of a workflow engine designed for personal computers but we also circumvented computing limitations of personal computers and the steep learning curve associated with creating workflows for distributed environments. Our converter extension has immediate applications for researchers and we showcase our results by means of three use cases relevant for life scientists: structural bioinformatics, immunoinformatics and metabolomics