Digital Preservation Services : State of the Art Analysis

Research report funded by the DC-NET project.An overview of the state of the art in service provision for digital preservation and curation. Its focus is on the areas where bridging the gaps is needed between e-Infrastructures and efficient and forward-looking digital preservation services. Based on a desktop study and a rapid analysis of some 190 currently available tools and services for digital preservation, the deliverable provides a high-level view on the range of instruments currently on offer to support various functions within a preservation system.European Commission, FP7peer-reviewe

Extracting and re-using research data from chemistry e-theses: the SPECTRa-T project

Scientific e-theses are data-rich resources, but much of the information they contain is not readily accessible. For chemistry, the SPECTRa-T project has addressed this problem by developing data-mining techniques to extract experimental data, creating RDF (Resource Description Framework) triples for exposure to sophisticated Semantic Web searches. We used OSCAR3, an Open Source chemistry text-mining tool, to parse and extract data from theses in PDF, and from theses in Office Open XML document format. Theses in PDF suffered data corruption and a loss of formatting that prevented the identification of chemical objects. Theses in .docx yielded semantically rich SciXML that enabled the additional extraction of associated data. Chemical objects were placed in a data repository, and RDF triples deposited in a triplestore. Data-mining from chemistry e-theses is both desirable and feasible; but the use of PDF, the de facto format standard for deposit in most repositories, prevents the optimal extraction of data for semantic querying. In order to facilitate this, we recommend that universities also require deposition of chemistry e-theses in an XML document format. Further work is required to clarify the complex IPR issues and ensure that they do not become an unwarranted barrier to data extraction and re-use

PDF-Malware Detection: A Survey and Taxonomy of Current Techniques

Portable Document Format, more commonly known as PDF, has become, in the last 20 years, a standard for document exchange and dissemination due its portable nature and widespread adoption. The flexibility and power of this format are not only leveraged by benign users, but from hackers as well who have been working to exploit various types of vulnerabilities, overcome security restrictions, and then transform the PDF format in one among the leading malicious code spread vectors. Analyzing the content of malicious PDF files to extract the main features that characterize the malware identity and behavior, is a fundamental task for modern threat intelligence platforms that need to learn how to automatically identify new attacks. This paper surveys existing state of the art about systems for the detection of malicious PDF files and organizes them in a taxonomy that separately considers the used approaches and the data analyzed to detect the presence of malicious code. © Springer International Publishing AG, part of Springer Nature 2018

A traffic classification method using machine learning algorithm

Applying concepts of attack investigation in IT industry, this idea has been developed to design a Traffic Classification Method using Data Mining techniques at the intersection of Machine Learning Algorithm, Which will classify the normal and malicious traffic. This classification will help to learn about the unknown attacks faced by IT industry. The notion of traffic classification is not a new concept; plenty of work has been done to classify the network traffic for heterogeneous application nowadays. Existing techniques such as (payload based, port based and statistical based) have their own pros and cons which will be discussed in this literature later, but classification using Machine Learning techniques is still an open field to explore and has provided very promising results up till now

Multiplierz: An Extensible API Based Desktop Environment for Proteomics Data Analysis

BACKGROUND. Efficient analysis of results from mass spectrometry-based proteomics experiments requires access to disparate data types, including native mass spectrometry files, output from algorithms that assign peptide sequence to MS/MS spectra, and annotation for proteins and pathways from various database sources. Moreover, proteomics technologies and experimental methods are not yet standardized; hence a high degree of flexibility is necessary for efficient support of high- and low-throughput data analytic tasks. Development of a desktop environment that is sufficiently robust for deployment in data analytic pipelines, and simultaneously supports customization for programmers and non-programmers alike, has proven to be a significant challenge. RESULTS. We describe multiplierz, a flexible and open-source desktop environment for comprehensive proteomics data analysis. We use this framework to expose a prototype version of our recently proposed common API (mzAPI) designed for direct access to proprietary mass spectrometry files. In addition to routine data analytic tasks, multiplierz supports generation of information rich, portable spreadsheet-based reports. Moreover, multiplierz is designed around a "zero infrastructure" philosophy, meaning that it can be deployed by end users with little or no system administration support. Finally, access to multiplierz functionality is provided via high-level Python scripts, resulting in a fully extensible data analytic environment for rapid development of custom algorithms and deployment of high-throughput data pipelines. CONCLUSION. Collectively, mzAPI and multiplierz facilitate a wide range of data analysis tasks, spanning technology development to biological annotation, for mass spectrometry-based proteomics research.Dana-Farber Cancer Institute; National Human Genome Research Institute (P50HG004233); National Science Foundation Integrative Graduate Education and Research Traineeship grant (DGE-0654108