The Decoding Toolbox (TDT): a versatile software package for multivariate analyses of functional imaging data

The multivariate analysis of brain signals has recently sparked a great amount of interest, yet accessible and versatile tools to carry out decoding analyses are scarce. Here we introduce The Decoding Toolbox (TDT) which represents a user-friendly, powerful and flexible package for multivariate analysis of functional brain imaging data. TDT is written in Matlab and equipped with an interface to the widely used brain data analysis package SPM. The toolbox allows running fast whole-brain analyses, region-of-interest analyses and searchlight analyses, using machine learning classifiers, pattern correlation analysis, or representational similarity analysis. It offers automatic creation and visualization of diverse cross-validation schemes, feature scaling, nested parameter selection, a variety of feature selection methods, multiclass capabilities, and pattern reconstruction from classifier weights. While basic users can implement a generic analysis in one line of code, advanced users can extend the toolbox to their needs or exploit the structure to combine it with external high-performance classification toolboxes. The toolbox comes with an example data set which can be used to try out the various analysis methods. Taken together, TDT offers a promising option for researchers who want to employ multivariate analyses of brain activity patterns.DFG, GRK 1589, Verarbeitung sensorischer Informationen in neuronalen SystemenBMBF, 01GQ1006, Modulation von Bewertungsprozessen beim menschlichen Entscheidungsverhalten: ein neurocomputationaler Ansat

An Open Source Pattern Recognition Toolbox for MATLAB

Pattern recognition and machine learning are becoming integral parts of algorithms in a wide range of applications. Different algorithms and approaches for machine learning include different tradeoffs between performance and computation, so during algorithm development it is often necessary to explore a variety of different approaches to a given task. A toolbox with a unified framework across multiple pattern recognition techniques enables algorithm developers the ability to rapidly evaluate different choices prior to deployment. MATLAB is a widely used environment for algorithm development and prototyping, and although several MATLAB toolboxes for pattern recognition are currently available these are either incomplete, expensive, or restrictively licensed. In this work we describe a MATLAB toolbox for pattern recognition and machine learning known as the PRT (Pattern Recognition Toolbox), licensed under the permissive MIT license. The PRT includes many popular techniques for data preprocessing, supervised learning, clustering, regression and feature selection, as well as a methodology for combining these components using a simple, uniform syntax. The resulting algorithms can be evaluated using cross-validation and a variety of scoring metrics to ensure robust performance when the algorithm is deployed. This paper presents an overview of the PRT as well as an example of usage on Fisher's Iris dataset

Large-scale feature selection with Gaussian mixture models for the classification of high dimensional remote sensing images

A large-scale feature selection wrapper is discussed for the classification of high dimensional remote sensing. An efficient implementation is proposed based on intrinsic properties of Gaussian mixtures models and block matrix. The criterion function is split into two parts:one that is updated to test each feature and one that needs to be updated only once per feature selection. This split saved a lot of computation for each test. The algorithm is implemented in C++ and integrated into the Orfeo Toolbox. It has been compared to other classification algorithms on two high dimension remote sensing images. Results show that the approach provides good classification accuracies with low computation time

SFO: A Toolbox for Submodular Function Optimization

In recent years, a fundamental problem structure has emerged as very useful in a variety of machine learning applications: Submodularity is an intuitive diminishing returns property, stating that adding an element to a smaller set helps more than adding it to a larger set. Similarly to convexity, submodularity allows one to efficiently find provably (near-) optimal solutions for large problems. We present SFO, a toolbox for use in MATLAB or Octave that implements algorithms for minimization and maximization of submodular functions. A tutorial script illustrates the application of submodularity to machine learning and AI problems such as feature selection, clustering, inference and optimized information gathering

A Matlab Toolbox for Feature Importance Ranking

More attention is being paid for feature importance ranking (FIR), in particular when thousands of features can be extracted for intelligent diagnosis and personalized medicine. A large number of FIR approaches have been proposed, while few are integrated for comparison and real-life applications. In this study, a matlab toolbox is presented and a total of 30 algorithms are collected. Moreover, the toolbox is evaluated on a database of 163 ultrasound images. To each breast mass lesion, 15 features are extracted. To figure out the optimal subset of features for classification, all combinations of features are tested and linear support vector machine is used for the malignancy prediction of lesions annotated in ultrasound images. At last, the effectiveness of FIR is analyzed according to performance comparison. The toolbox is online (https://github.com/NicoYuCN/matFIR). In our future work, more FIR methods, feature selection methods and machine learning classifiers will be integrated

Application of feast (Feature Selection Toolbox) in ids (Intrusion detection Systems)

Security in computer networks has become a critical point for many organizations, but keeping data integrity demands time and large economic investments, in consequence there has been several solution approaches between hardware and software but sometimes these has become inefficient for attacks detection. This paper presents research results obtained implementing algorithms from FEAST, a Matlab Toolbox with the purpose of selecting the method with better precision results for different attacks detection using the least number of features. The Data Set NSL-KDD was taken as reference. The Relief method obtained the best precision levels for attack detection: 86.20%(NORMAL), 85.71% (DOS), 88.42% (PROBE), 93.11%(U2R), 90.07(R2L), which makes it a promising technique for features selection in data network intrusions

Towards Interpretable Machine Learning for Automated Damage Detection Based on Ultrasonic Guided Waves

Data-driven analysis for damage assessment has a large potential in structural health monitoring (SHM) systems, where sensors are permanently attached to the structure, enabling continuous and frequent measurements. In this contribution, we propose a machine learning (ML) approach for automated damage detection, based on an ML toolbox for industrial condition monitoring. The toolbox combines multiple complementary algorithms for feature extraction and selection and automatically chooses the best combination of methods for the dataset at hand. Here, this toolbox is applied to a guided wave-based SHM dataset for varying temperatures and damage locations, which is freely available on the Open Guided Waves platform. A classification rate of 96.2% is achieved, demonstrating reliable and automated damage detection. Moreover, the ability of the ML model to identify a damaged structure at untrained damage locations and temperatures is demonstrated

Feature selection, learning metrics and dimension reduction in training and classification processes in intrusion detection systems

This research presents an IDS prototype in Matlab that assess network traffic connections contained in the NSL-KDD dataset, comparing feature selection techniques available in FEAST toolbox, refining prior results applying dimension reduction technique ISOMAP. The classification process used a supervised learning technique called Support Vector Machines (SVM). The comparative analysis related to detection rates by attack category are conclusive that MRMR+PCA+SVM (selection, reduction and classification techniques) combined obtained more promising results, just using 5 of 41 available features in the dataset. The results obtained were: 85.42% normal traffic, 80.77% DoS, 90.41% Probe, 91.78% U2R and 83.25% R2L