Fine-grained classification via mixture of deep convolutional neural networks

We present a novel deep convolutional neural network (DCNN) system for fine-grained image classification, called a mixture of DCNNs (MixDCNN). The fine-grained image classification problem is characterised by large intra-class variations and small inter-class variations. To overcome these problems our proposed MixDCNN system partitions images into K subsets of similar images and learns an expert DCNN for each subset. The output from each of the K DCNNs is combined to form a single classification decision. In contrast to previous techniques, we provide a formulation to perform joint end-to-end training of the K DCNNs simultaneously. Extensive experiments, on three datasets using two network structures (AlexNet and GoogLeNet), show that the proposed MixDCNN system consistently outperforms other methods. It provides a relative improvement of 12.7% and achieves state-of-the-art results on two dataset

Improved vision-based weed classification for robotic weeding – a method for increasing speed while retaining accuracy

In this paper, we demonstrate how a deep convolutional neural network (DCNN) can be deployed in resource limited environments, such as robots, to reduce the inference time by more than an order of magnitude while retaining high classification accuracy and robustness to novel conditions. This is achieved by training a lightweight DCNN, or compressed model, via model distillation. We show that training models using this approach outperform training a similar model from scratch, using the same data, for weed classification. Using model distillation we are able to improve the accuracy from 97.1% to 97.9% for similar conditions (as the training data) and from 86.4% to 89.8% for different conditions (as the training data). This is in comparison to a traditional approach using robust local binary pattern features which achieves 87.7% for classifying in similar conditions and 83.9% for classifying in different conditions. Finally, we compare this compressed model to a complex fine-tuned model which achieves higher accuracy of 99.6% for the same condition and 95.8% for different conditions but has 100.0 times more parameters (larger model size) and is 40.6 times slower at computing the inference

Plant Identification in an Open-world (LifeCLEF 2016)

International audienceThe LifeCLEF plant identification challenge aims at evaluating plant identification methods and systems at a very large scale, close to the conditions of a real-world biodiversity monitoring scenario. The 2016-th edition was actually conducted on a set of more than 110K images illustrating 1000 plant species living in West Europe, built through a large-scale participatory sensing platform initiated in 2011 and which now involves tens of thousands of contributors. The main novelty over the previous years is that the identification task was evaluated as an open-setrecognition problem, i.e. a problem in which the recognition system has to be robust to unknown and never seen categories. Beyond the brute-force classification across the known classes of the training set, the big challenge was thus to automatically reject the false positive classification hits that are caused by the unknown classes. This overview presents more precisely the resources and assessments of the challenge, summarizes the approaches and systems employed by the participating research groups, and provides an analysis of the main outcomes

LifeCLEF 2016: Multimedia Life Species Identification Challenges

International audienceUsing multimedia identification tools is considered as one of the most promising solutions to help bridge the taxonomic gap and build accurate knowledge of the identity, the geographic distribution and the evolution of living species. Large and structured communities of nature observers (e.g., iSpot, Xeno-canto, Tela Botanica, etc.) as well as big monitoring equipment have actually started to produce outstanding collections of multimedia records. Unfortunately, the performance of the state-of-the-art analysis techniques on such data is still not well understood and is far from reaching real world requirements. The LifeCLEF lab proposes to evaluate these challenges around 3 tasks related to multimedia information retrieval and fine-grained classification problems in 3 domains. Each task is based on large volumes of real-world data and the measured challenges are defined in collaboration with biologists and environmental stakeholders to reflect realistic usage scenarios. For each task, we report the methodology, the data sets as well as the results and the main outcom

Low-Shot Learning for the Semantic Segmentation of Remote Sensing Imagery

Deep-learning frameworks have made remarkable progress thanks to the creation of large annotated datasets such as ImageNet, which has over one million training images. Although this works well for color (RGB) imagery, labeled datasets for other sensor modalities (e.g., multispectral and hyperspectral) are minuscule in comparison. This is because annotated datasets are expensive and man-power intensive to complete; and since this would be impractical to accomplish for each type of sensor, current state-of-the-art approaches in computer vision are not ideal for remote sensing problems. The shortage of annotated remote sensing imagery beyond the visual spectrum has forced researchers to embrace unsupervised feature extracting frameworks. These features are learned on a per-image basis, so they tend to not generalize well across other datasets. In this dissertation, we propose three new strategies for learning feature extracting frameworks with only a small quantity of annotated image data; including 1) self-taught feature learning, 2) domain adaptation with synthetic imagery, and 3) semi-supervised classification. ``Self-taught\u27\u27 feature learning frameworks are trained with large quantities of unlabeled imagery, and then these networks extract spatial-spectral features from annotated data for supervised classification. Synthetic remote sensing imagery can be used to boot-strap a deep convolutional neural network, and then we can fine-tune the network with real imagery. Semi-supervised classifiers prevent overfitting by jointly optimizing the supervised classification task along side one or more unsupervised learning tasks (i.e., reconstruction). Although obtaining large quantities of annotated image data would be ideal, our work shows that we can make due with less cost-prohibitive methods which are more practical to the end-user

Plant Identification in an Open-world (LifeCLEF 2016)

International audienceThe LifeCLEF plant identification challenge aims at evaluating plant identification methods and systems at a very large scale, close to the conditions of a real-world biodiversity monitoring scenario. The 2016-th edition was actually conducted on a set of more than 110K images illustrating 1000 plant species living in West Europe, built through a large-scale participatory sensing platform initiated in 2011 and which now involves tens of thousands of contributors. The main novelty over the previous years is that the identification task was evaluated as an open-setrecognition problem, i.e. a problem in which the recognition system has to be robust to unknown and never seen categories. Beyond the brute-force classification across the known classes of the training set, the big challenge was thus to automatically reject the false positive classification hits that are caused by the unknown classes. This overview presents more precisely the resources and assessments of the challenge, summarizes the approaches and systems employed by the participating research groups, and provides an analysis of the main outcomes

Représentations de niveau intermédiaire pour la modélisation d'objets

In this thesis we propose the use of mid-level representations, and in particular i) medial axes, ii) object parts, and iii)convolutional features, for modelling objects.The first part of the thesis deals with detecting medial axes in natural RGB images. We adopt a learning approach, utilizing colour, texture and spectral clustering features, to build a classifier that produces a dense probability map for symmetry. Multiple Instance Learning (MIL) allows us to treat scale and orientation as latent variables during training, while a variation based on random forests offers significant gains in terms of running time.In the second part of the thesis we focus on object part modeling using both hand-crafted and learned feature representations. We develop a coarse-to-fine, hierarchical approach that uses probabilistic bounds for part scores to decrease the computational cost of mixture models with a large number of HOG-based templates. These efficiently computed probabilistic bounds allow us to quickly discard large parts of the image, and evaluate the exact convolution scores only at promising locations. Our approach achieves a "4times-5times" speedup over the naive approach with minimal loss in performance.We also employ convolutional features to improve object detection. We use a popular CNN architecture to extract responses from an intermediate convolutional layer. We integrate these responses in the classic DPM pipeline, replacing hand-crafted HOG features, and observe a significant boost in detection performance (~14.5% increase in mAP).In the last part of the thesis we experiment with fully convolutional neural networks for the segmentation of object parts.We re-purpose a state-of-the-art CNN to perform fine-grained semantic segmentation of object parts and use a fully-connected CRF as a post-processing step to obtain sharp boundaries.We also inject prior shape information in our model through a Restricted Boltzmann Machine, trained on ground-truth segmentations.Finally, we train a new fully-convolutional architecture from a random initialization, to segment different parts of the human brain in magnetic resonance image data.Our methods achieve state-of-the-art results on both types of data.Dans cette thèse, nous proposons l'utilisation de représentations de niveau intermédiaire, et en particulier i) d'axes médians, ii) de parties d'objets, et iii) des caractéristiques convolutionnels, pour modéliser des objets.La première partie de la thèse traite de détecter les axes médians dans des images naturelles en couleur. Nous adoptons une approche d'apprentissage, en utilisant la couleur, la texture et les caractéristiques de regroupement spectral pour construire un classificateur qui produit une carte de probabilité dense pour la symétrie. Le Multiple Instance Learning (MIL) nous permet de traiter l'échelle et l'orientation comme des variables latentes pendant l'entraînement, tandis qu'une variante fondée sur les forêts aléatoires offre des gains significatifs en termes de temps de calcul.Dans la deuxième partie de la thèse, nous traitons de la modélisation des objets, utilisant des modèles de parties déformables (DPM). Nous développons une approche « coarse-to-fine » hiérarchique, qui utilise des bornes probabilistes pour diminuer le coût de calcul dans les modèles à grand nombre de composants basés sur HOGs. Ces bornes probabilistes, calculés de manière efficace, nous permettent d'écarter rapidement de grandes parties de l'image, et d'évaluer précisément les filtres convolutionnels seulement à des endroits prometteurs. Notre approche permet d'obtenir une accélération de 4-5 fois sur l'approche naïve, avec une perte minimale en performance.Nous employons aussi des réseaux de neurones convolutionnels (CNN) pour améliorer la détection d'objets. Nous utilisons une architecture CNN communément utilisée pour extraire les réponses de la dernière couche de convolution. Nous intégrons ces réponses dans l'architecture DPM classique, remplaçant les descripteurs HOG fabriqués à la main, et nous observons une augmentation significative de la performance de détection (~14.5% de mAP).Dans la dernière partie de la thèse nous expérimentons avec des réseaux de neurones entièrement convolutionnels pous la segmentation de parties d'objets.Nous réadaptons un CNN utilisé à l'état de l'art pour effectuer une segmentation sémantique fine de parties d'objets et nous utilisons un CRF entièrement connecté comme étape de post-traitement pour obtenir des bords fins.Nous introduirons aussi un à priori sur les formes à l'aide d'une Restricted Boltzmann Machine (RBM), à partir des segmentations de vérité terrain.Enfin, nous concevons une nouvelle architecture entièrement convolutionnel, et l'entraînons sur des données d'image à résonance magnétique du cerveau, afin de segmenter les différentes parties du cerveau humain.Notre approche permet d'atteindre des résultats à l'état de l'art sur les deux types de données

Applicability domains of neural networks for toxicity prediction

In this paper, the term "applicability domain" refers to the range of chemical compounds for which the statistical quantitative structure-activity relationship (QSAR) model can accurately predict their toxicity. This is a crucial concept in the development and practical use of these models. First, a multidisciplinary review is provided regarding the theory and practice of applicability domains in the context of toxicity problems using the classical QSAR model. Then, the advantages and improved performance of neural networks (NNs), which are the most promising machine learning algorithms, are reviewed. Within the domain of medicinal chemistry, nine different methods using NNs for toxicity prediction were compared utilizing 29 alternative artificial intelligence (AI) techniques. Similarly, seven NN-based toxicity prediction methodologies were compared to six other AI techniques within the realm of food safety, 11 NN-based methodologies were compared to 16 different AI approaches in the environmental sciences category and four specific NN-based toxicity prediction methodologies were compared to nine alternative AI techniques in the field of industrial hygiene. Within the reviewed approaches, given known toxic compound descriptors and behaviors, we observed a difficulty in being able to extrapolate and predict the effects with untested chemical compounds. Different methods can be used for unsupervised clustering, such as distance-based approaches and consensus-based decision methods. Additionally, the importance of model validation has been highlighted within a regulatory context according to the Organization for Economic Co-operation and Development (OECD) principles, to predict the toxicity of potential new drugs in medicinal chemistry, to determine the limits of detection for harmful substances in food to predict the toxicity limits of chemicals in the environment, and to predict the exposure limits to harmful substances in the workplace. Despite its importance, a thorough application of toxicity models is still restricted in the field of medicinal chemistry and is virtually overlooked in other scientific domains. Consequently, only a small proportion of the toxicity studies conducted in medicinal chemistry consider the applicability domain in their mathematical models, thereby limiting their predictive power to untested drugs. Conversely, the applicability of these models is crucial; however, this has not been sufficiently assessed in toxicity prediction or in other related areas such as food science, environmental science, and industrial hygiene. Thus, this review sheds light on the prevalent use of Neural Networks in toxicity prediction, thereby serving as a valuable resource for researchers and practitioners across these multifaceted domains that could be extended to other fields in future research