A Survey on Deep Learning in Medical Image Analysis

Deep learning algorithms, in particular convolutional networks, have rapidly become a methodology of choice for analyzing medical images. This paper reviews the major deep learning concepts pertinent to medical image analysis and summarizes over 300 contributions to the field, most of which appeared in the last year. We survey the use of deep learning for image classification, object detection, segmentation, registration, and other tasks and provide concise overviews of studies per application area. Open challenges and directions for future research are discussed.Comment: Revised survey includes expanded discussion section and reworked introductory section on common deep architectures. Added missed papers from before Feb 1st 201

Learning Spectral-Spatial-Temporal Features via a Recurrent Convolutional Neural Network for Change Detection in Multispectral Imagery

Change detection is one of the central problems in earth observation and was extensively investigated over recent decades. In this paper, we propose a novel recurrent convolutional neural network (ReCNN) architecture, which is trained to learn a joint spectral-spatial-temporal feature representation in a unified framework for change detection in multispectral images. To this end, we bring together a convolutional neural network (CNN) and a recurrent neural network (RNN) into one end-to-end network. The former is able to generate rich spectral-spatial feature representations, while the latter effectively analyzes temporal dependency in bi-temporal images. In comparison with previous approaches to change detection, the proposed network architecture possesses three distinctive properties: 1) It is end-to-end trainable, in contrast to most existing methods whose components are separately trained or computed; 2) it naturally harnesses spatial information that has been proven to be beneficial to change detection task; 3) it is capable of adaptively learning the temporal dependency between multitemporal images, unlike most of algorithms that use fairly simple operation like image differencing or stacking. As far as we know, this is the first time that a recurrent convolutional network architecture has been proposed for multitemporal remote sensing image analysis. The proposed network is validated on real multispectral data sets. Both visual and quantitative analysis of experimental results demonstrates competitive performance in the proposed mode

Deep learning in remote sensing: a review

Standing at the paradigm shift towards data-intensive science, machine learning techniques are becoming increasingly important. In particular, as a major breakthrough in the field, deep learning has proven as an extremely powerful tool in many fields. Shall we embrace deep learning as the key to all? Or, should we resist a 'black-box' solution? There are controversial opinions in the remote sensing community. In this article, we analyze the challenges of using deep learning for remote sensing data analysis, review the recent advances, and provide resources to make deep learning in remote sensing ridiculously simple to start with. More importantly, we advocate remote sensing scientists to bring their expertise into deep learning, and use it as an implicit general model to tackle unprecedented large-scale influential challenges, such as climate change and urbanization.Comment: Accepted for publication IEEE Geoscience and Remote Sensing Magazin

Unsupervised feature learning by augmenting single images

When deep learning is applied to visual object recognition, data augmentation is often used to generate additional training data without extra labeling cost. It helps to reduce overfitting and increase the performance of the algorithm. In this paper we investigate if it is possible to use data augmentation as the main component of an unsupervised feature learning architecture. To that end we sample a set of random image patches and declare each of them to be a separate single-image surrogate class. We then extend these trivial one-element classes by applying a variety of transformations to the initial 'seed' patches. Finally we train a convolutional neural network to discriminate between these surrogate classes. The feature representation learned by the network can then be used in various vision tasks. We find that this simple feature learning algorithm is surprisingly successful, achieving competitive classification results on several popular vision datasets (STL-10, CIFAR-10, Caltech-101).Comment: ICLR 2014 workshop track submission (7 pages, 4 figures, 1 table

Convolutional Sparse Kernel Network for Unsupervised Medical Image Analysis

The availability of large-scale annotated image datasets and recent advances in supervised deep learning methods enable the end-to-end derivation of representative image features that can impact a variety of image analysis problems. Such supervised approaches, however, are difficult to implement in the medical domain where large volumes of labelled data are difficult to obtain due to the complexity of manual annotation and inter- and intra-observer variability in label assignment. We propose a new convolutional sparse kernel network (CSKN), which is a hierarchical unsupervised feature learning framework that addresses the challenge of learning representative visual features in medical image analysis domains where there is a lack of annotated training data. Our framework has three contributions: (i) We extend kernel learning to identify and represent invariant features across image sub-patches in an unsupervised manner. (ii) We initialise our kernel learning with a layer-wise pre-training scheme that leverages the sparsity inherent in medical images to extract initial discriminative features. (iii) We adapt a multi-scale spatial pyramid pooling (SPP) framework to capture subtle geometric differences between learned visual features. We evaluated our framework in medical image retrieval and classification on three public datasets. Our results show that our CSKN had better accuracy when compared to other conventional unsupervised methods and comparable accuracy to methods that used state-of-the-art supervised convolutional neural networks (CNNs). Our findings indicate that our unsupervised CSKN provides an opportunity to leverage unannotated big data in medical imaging repositories.Comment: Accepted by Medical Image Analysis (with a new title 'Convolutional Sparse Kernel Network for Unsupervised Medical Image Analysis'). The manuscript is available from following link (https://doi.org/10.1016/j.media.2019.06.005