22,314 research outputs found

    Analysis of reliable deployment of TDOA local positioning architectures

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    .Local Positioning Systems (LPS) are supposing an attractive research topic over the last few years. LPS are ad-hoc deployments of wireless sensor networks for particularly adapt to the environment characteristics in harsh environments. Among LPS, those based on temporal measurements stand out for their trade-off among accuracy, robustness and costs. But, regardless the LPS architecture considered, an optimization of the sensor distribution is required for achieving competitive results. Recent studies have shown that under optimized node distributions, time-based LPS cumulate the bigger error bounds due to synchronization errors. Consequently, asynchronous architectures such as Asynchronous Time Difference of Arrival (A-TDOA) have been recently proposed. However, the A-TDOA architecture supposes the concentration of the time measurement in a single clock of a coordinator sensor making this architecture less versatile. In this paper, we present an optimization methodology for overcoming the drawbacks of the A-TDOA architecture in nominal and failure conditions with regards to the synchronous TDOA. Results show that this optimization strategy allows the reduction of the uncertainties in the target location by 79% and 89.5% and the enhancement of the convergence properties by 86% and 33% of the A-TDOA architecture with regards to the TDOA synchronous architecture in two different application scenarios. In addition, maximum convergence points are more easily found in the A-TDOA in both configurations concluding the benefits of this architecture in LPS high-demanded applicationS

    Unraveling the effect of sex on human genetic architecture

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    Sex is arguably the most important differentiating characteristic in most mammalian species, separating populations into different groups, with varying behaviors, morphologies, and physiologies based on their complement of sex chromosomes, amongst other factors. In humans, despite males and females sharing nearly identical genomes, there are differences between the sexes in complex traits and in the risk of a wide array of diseases. Sex provides the genome with a distinct hormonal milieu, differential gene expression, and environmental pressures arising from gender societal roles. This thus poses the possibility of observing gene by sex (GxS) interactions between the sexes that may contribute to some of the phenotypic differences observed. In recent years, there has been growing evidence of GxS, with common genetic variation presenting different effects on males and females. These studies have however been limited in regards to the number of traits studied and/or statistical power. Understanding sex differences in genetic architecture is of great importance as this could lead to improved understanding of potential differences in underlying biological pathways and disease etiology between the sexes and in turn help inform personalised treatments and precision medicine. In this thesis we provide insights into both the scope and mechanism of GxS across the genome of circa 450,000 individuals of European ancestry and 530 complex traits in the UK Biobank. We found small yet widespread differences in genetic architecture across traits through the calculation of sex-specific heritability, genetic correlations, and sex-stratified genome-wide association studies (GWAS). We further investigated whether sex-agnostic (non-stratified) efforts could potentially be missing information of interest, including sex-specific trait-relevant loci and increased phenotype prediction accuracies. Finally, we studied the potential functional role of sex differences in genetic architecture through sex biased expression quantitative trait loci (eQTL) and gene-level analyses. Overall, this study marks a broad examination of the genetics of sex differences. Our findings parallel previous reports, suggesting the presence of sexual genetic heterogeneity across complex traits of generally modest magnitude. Furthermore, our results suggest the need to consider sex-stratified analyses in future studies in order to shed light into possible sex-specific molecular mechanisms

    Structure and adsorption properties of gas-ionic liquid interfaces

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    Supported ionic liquids are a diverse class of materials that have been considered as a promising approach to design new surface properties within solids for gas adsorption and separation applications. In these materials, the surface morphology and composition of a porous solid are modified by depositing ionic liquid. The resulting materials exhibit a unique combination of structural and gas adsorption properties arising from both components, the support, and the liquid. Naturally, theoretical and experimental studies devoted to understanding the underlying principles of exhibited interfacial properties have been an intense area of research. However, a complete understanding of the interplay between interfacial gas-liquid and liquid-solid interactions as well as molecular details of these processes remains elusive. The proposed problem is challenging and in this thesis, it is approached from two different perspectives applying computational and experimental techniques. In particular, molecular dynamics simulations are used to model gas adsorption in films of ionic liquids on a molecular level. A detailed description of the modeled systems is possible if the interfacial and bulk properties of ionic liquid films are separated. In this study, we use a unique method that recognizes the interfacial and bulk structures of ionic liquids and distinguishes gas adsorption from gas solubility. By combining classical nitrogen sorption experiments with a mean-field theory, we study how liquid-solid interactions influence the adsorption of ionic liquids on the surface of the porous support. The developed approach was applied to a range of ionic liquids that feature different interaction behavior with gas and porous support. Using molecular simulations with interfacial analysis, it was discovered that gas adsorption capacity can be directly related to gas solubility data, allowing the development of a predictive model for the gas adsorption performance of ionic liquid films. Furthermore, it was found that this CO2 adsorption on the surface of ionic liquid films is determined by the specific arrangement of cations and anions on the surface. A particularly important result is that, for the first time, a quantitative relation between these structural and adsorption properties of different ionic liquid films has been established. This link between two types of properties determines design principles for supported ionic liquids. However, the proposed predictive model and design principles rely on the assumption that the ionic liquid is uniformly distributed on the surface of the porous support. To test how ionic liquids behave under confinement, nitrogen physisorption experiments were conducted for micro‐ and mesopore analysis of supported ionic liquid materials. In conjunction with mean-field density functional theory applied to the lattice gas and pore models, we revealed different scenarios for the pore-filling mechanism depending on the strength of the liquid-solid interactions. In this thesis, a combination of computational and experimental studies provides a framework for the characterization of complex interfacial gas-liquid and liquid-solid processes. It is shown that interfacial analysis is a powerful tool for studying molecular-level interactions between different phases. Finally, nitrogen sorption experiments were effectively used to obtain information on the structure of supported ionic liquids

    The influence of blockchains and internet of things on global value chain

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    Despite the increasing proliferation of deploying the Internet of Things (IoT) in global value chain (GVC), several challenges might lead to a lack of trust among value chain partners, e.g., technical challenges (i.e., confidentiality, authenticity, and privacy); and security challenges (i.e., counterfeiting, physical tempering, and data theft). In this study, we argue that Blockchain technology, when combined with the IoT ecosystem, will strengthen GVC and enhance value creation and capture among value chain partners. Thus, we examine the impact of Blockchain technology when combined with the IoT ecosystem and how it can be utilized to enhance value creation and capture among value chain partners. We collected data through an online survey, and 265 UK Agri-food retailers completed the survey. Our data were analyzed using structural equation modelling (SEM). Our finding reveals that Blockchain technology enhances GVC by improving IoT scalability, security, and traceability when combined with the IoT ecosystem. Which, in turn, strengthens GVC and creates more value for value chain partners – which serves as a competitive advantage. Finally, our research outlines the theoretical and practical contribution of combining Blockchain technology and the IoT ecosystem

    The labour supply and retirement of older workers: an empirical analysis

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    This thesis examines the labour supply of older workers, their movement into retirement, and any movement out of retirement and back into work. In particular the labour force participation, labour supply and wage elasticity and other income elasticity of work hours are estimated for older workers and compared to younger workers. The thesis goes on to look at the movement into retirement for older workers as a whole by examining cohorts by gender, wave and age. The thesis also presents a descriptive and quantitative ‱ examination of the changes in income and happiness that occur as an individual retires. Finally the thesis examines the reasons why an individual may return to work from v . retirement. The results of the findings suggest: that younger workers are significantly more responsive to wage and household income changes than older worker

    Gendered spaces in contemporary Irish poetry

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    The thrust of this thesis is summarized by the following questions: How does contemporary Irish poetry migrate from traditional conceptions of identity drawn on by the cultural nationalism of the Irish Literary Revival, and what effects does this have on understanding gendered and national identity formation? Chapters are on the following: Seamus Heaney, Tom Paulin, Paul Muldoon, MedbhMcGuckian, Eavan Boland and Sara Berkeley. These poets are chosen for discussion since their work most effectively engages with the relationship between woman and nation, the representation of gendered national identity, and the importance of feminist and post-colonial theorization. Focusing on poetry worth and South of the border from the last fifteen years, the thesis asks how a younger generation of poets provide a response to nationality which is significantly different from their predecessors. The thesis is composed of three parts: the first understand how the male poets depart from conventional conceptions of the nation with reference to post-colonial theorization; the second explores how feminist theorization informs readings of how the female poets respond to the nation; the final part investigates migration in the poetry and problematizes this in terms of post-nationalism. Discussing the issue of deterritorialization in Irish poetry, the thesis notice how as the poets attempt to take flight from the mythologies of nationhood, they undermine the monoliths of gendered and national identity inscribed within Irish political discourse, which is typified at a representative level by the figure of Mother Ireland or Cathleen Ni Houlihan. Investigating the ways in which gender and nation, and the body and space are reinscribed by the poets, the thesis argues that their poetry challenges authentic conceptions of Irish identity and the nation-state, so as to loosen the legacy of a colonial and nationalist inheritance

    Machine learning and large scale cancer omic data: decoding the biological mechanisms underpinning cancer

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    Many of the mechanisms underpinning cancer risk and tumorigenesis are still not fully understood. However, the next-generation sequencing revolution and the rapid advances in big data analytics allow us to study cells and complex phenotypes at unprecedented depth and breadth. While experimental and clinical data are still fundamental to validate findings and confirm hypotheses, computational biology is key for the analysis of system- and population-level data for detection of hidden patterns and the generation of testable hypotheses. In this work, I tackle two main questions regarding cancer risk and tumorigenesis that require novel computational methods for the analysis of system-level omic data. First, I focused on how frequent, low-penetrance inherited variants modulate cancer risk in the broader population. Genome-Wide Association Studies (GWAS) have shown that Single Nucleotide Polymorphisms (SNP) contribute to cancer risk with multiple subtle effects, but they are still failing to give further insight into their synergistic effects. I developed a novel hierarchical Bayesian regression model, BAGHERA, to estimate heritability at the gene-level from GWAS summary statistics. I then used BAGHERA to analyse data from 38 malignancies in the UK Biobank. I showed that genes with high heritable risk are involved in key processes associated with cancer and are often localised in genes that are somatically mutated drivers. Heritability, like many other omics analysis methods, study the effects of DNA variants on single genes in isolation. However, we know that most biological processes require the interplay of multiple genes and we often lack a broad perspective on them. For the second part of this thesis, I then worked on the integration of Protein-Protein Interaction (PPI) graphs and omics data, which bridges this gap and recapitulates these interactions at a system level. First, I developed a modular and scalable Python package, PyGNA, that enables robust statistical testing of genesets' topological properties. PyGNA complements the literature with a tool that can be routinely introduced in bioinformatics automated pipelines. With PyGNA I processed multiple genesets obtained from genomics and transcriptomics data. However, topological properties alone have proven to be insufficient to fully characterise complex phenotypes. Therefore, I focused on a model that allows to combine topological and functional data to detect multiple communities associated with a phenotype. Detecting cancer-specific submodules is still an open problem, but it has the potential to elucidate mechanisms detectable only by integrating multi-omics data. Building on the recent advances in Graph Neural Networks (GNN), I present a supervised geometric deep learning model that combines GNNs and Stochastic Block Models (SBM). The model is able to learn multiple graph-aware representations, as multiple joint SBMs, of the attributed network, accounting for nodes participating in multiple processes. The simultaneous estimation of structure and function provides an interpretable picture of how genes interact in specific conditions and it allows to detect novel putative pathways associated with cancer

    Scalable software and models for large-scale extracellular recordings

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    The brain represents information about the world through the electrical activity of populations of neurons. By placing an electrode near a neuron that is firing (spiking), it is possible to detect the resulting extracellular action potential (EAP) that is transmitted down an axon to other neurons. In this way, it is possible to monitor the communication of a group of neurons to uncover how they encode and transmit information. As the number of recorded neurons continues to increase, however, so do the data processing and analysis challenges. It is crucial that scalable software and analysis tools are developed and made available to the neuroscience community to keep up with the large amounts of data that are already being gathered. This thesis is composed of three pieces of work which I develop in order to better process and analyze large-scale extracellular recordings. My work spans all stages of extracellular analysis from the processing of raw electrical recordings to the development of statistical models to reveal underlying structure in neural population activity. In the first work, I focus on developing software to improve the comparison and adoption of different computational approaches for spike sorting. When analyzing neural recordings, most researchers are interested in the spiking activity of individual neurons, which must be extracted from the raw electrical traces through a process called spike sorting. Much development has been directed towards improving the performance and automation of spike sorting. This continuous development, while essential, has contributed to an over-saturation of new, incompatible tools that hinders rigorous benchmarking and complicates reproducible analysis. To address these limitations, I develop SpikeInterface, an open-source, Python framework designed to unify preexisting spike sorting technologies into a single toolkit and to facilitate straightforward benchmarking of different approaches. With this framework, I demonstrate that modern, automated spike sorters have low agreement when analyzing the same dataset, i.e. they find different numbers of neurons with different activity profiles; This result holds true for a variety of simulated and real datasets. Also, I demonstrate that utilizing a consensus-based approach to spike sorting, where the outputs of multiple spike sorters are combined, can dramatically reduce the number of falsely detected neurons. In the second work, I focus on developing an unsupervised machine learning approach for determining the source location of individually detected spikes that are recorded by high-density, microelectrode arrays. By localizing the source of individual spikes, my method is able to determine the approximate position of the recorded neuriii ons in relation to the microelectrode array. To allow my model to work with large-scale datasets, I utilize deep neural networks, a family of machine learning algorithms that can be trained to approximate complicated functions in a scalable fashion. I evaluate my method on both simulated and real extracellular datasets, demonstrating that it is more accurate than other commonly used methods. Also, I show that location estimates for individual spikes can be utilized to improve the efficiency and accuracy of spike sorting. After training, my method allows for localization of one million spikes in approximately 37 seconds on a TITAN X GPU, enabling real-time analysis of massive extracellular datasets. In my third and final presented work, I focus on developing an unsupervised machine learning model that can uncover patterns of activity from neural populations associated with a behaviour being performed. Specifically, I introduce Targeted Neural Dynamical Modelling (TNDM), a statistical model that jointly models the neural activity and any external behavioural variables. TNDM decomposes neural dynamics (i.e. temporal activity patterns) into behaviourally relevant and behaviourally irrelevant dynamics; the behaviourally relevant dynamics constitute all activity patterns required to generate the behaviour of interest while behaviourally irrelevant dynamics may be completely unrelated (e.g. other behavioural or brain states), or even related to behaviour execution (e.g. dynamics that are associated with behaviour generally but are not task specific). Again, I implement TNDM using a deep neural network to improve its scalability and expressivity. On synthetic data and on real recordings from the premotor (PMd) and primary motor cortex (M1) of a monkey performing a center-out reaching task, I show that TNDM is able to extract low-dimensional neural dynamics that are highly predictive of behaviour without sacrificing its fit to the neural data
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