PEAR: PEriodic And fixed Rank separation for fast fMRI

In functional MRI (fMRI), faster acquisition via undersampling of data can improve the spatial-temporal resolution trade-off and increase statistical robustness through increased degrees-of-freedom. High quality reconstruction of fMRI data from undersampled measurements requires proper modeling of the data. We present an fMRI reconstruction approach based on modeling the fMRI signal as a sum of periodic and fixed rank components, for improved reconstruction from undersampled measurements. We decompose the fMRI signal into a component which a has fixed rank and a component consisting of a sum of periodic signals which is sparse in the temporal Fourier domain. Data reconstruction is performed by solving a constrained problem that enforces a fixed, moderate rank on one of the components, and a limited number of temporal frequencies on the other. Our approach is coined PEAR - PEriodic And fixed Rank separation for fast fMRI. Experimental results include purely synthetic simulation, a simulation with real timecourses and retrospective undersampling of a real fMRI dataset. Evaluation was performed both quantitatively and visually versus ground truth, comparing PEAR to two additional recent methods for fMRI reconstruction from undersampled measurements. Results demonstrate PEAR's improvement in estimating the timecourses and activation maps versus the methods compared against at acceleration ratios of R=8,16 (for simulated data) and R=6.66,10 (for real data). PEAR results in reconstruction with higher fidelity than when using a fixed-rank based model or a conventional Low-rank+Sparse algorithm. We have shown that splitting the functional information between the components leads to better modeling of fMRI, over state-of-the-art methods

Low-rank and sparse reconstruction in dynamic magnetic resonance imaging via proximal splitting methods

Dynamic magnetic resonance imaging (MRI) consists of collecting multiple MR images in time, resulting in a spatio-temporal signal. However, MRI intrinsically suffers from long acquisition times due to various constraints. This limits the full potential of dynamic MR imaging, such as obtaining high spatial and temporal resolutions which are crucial to observe dynamic phenomena. This dissertation addresses the problem of the reconstruction of dynamic MR images from a limited amount of samples arising from a nuclear magnetic resonance experiment. The term limited can be explained by the approach taken in this thesis to speed up scan time, which is based on violating the Nyquist criterion by skipping measurements that would be normally acquired in a standard MRI procedure. The resulting problem can be classified in the general framework of linear ill-posed inverse problems. This thesis shows how low-dimensional signal models, specifically lowrank and sparsity, can help in the reconstruction of dynamic images from partial measurements. The use of these models are justified by significant developments in signal recovery techniques from partial data that have emerged in recent years in signal processing. The major contributions of this thesis are the development and characterisation of fast and efficient computational tools using convex low-rank and sparse constraints via proximal gradient methods, the development and characterisation of a novel joint reconstruction–separation method via the low-rank plus sparse matrix decomposition technique, and the development and characterisation of low-rank based recovery methods in the context of dynamic parallel MRI. Finally, an additional contribution of this thesis is to formulate the various MR image reconstruction problems in the context of convex optimisation to develop algorithms based on proximal splitting methods

Fast and Provable Algorithms for Spectrally Sparse Signal Reconstruction via Low-Rank Hankel Matrix Completion

A spectrally sparse signal of order $r$ is a mixture of $r$ damped or undamped complex sinusoids. This paper investigates the problem of reconstructing spectrally sparse signals from a random subset of $n$ regular time domain samples, which can be reformulated as a low rank Hankel matrix completion problem. We introduce an iterative hard thresholding (IHT) algorithm and a fast iterative hard thresholding (FIHT) algorithm for efficient reconstruction of spectrally sparse signals via low rank Hankel matrix completion. Theoretical recovery guarantees have been established for FIHT, showing that $O(r^2\log^2(n))$ number of samples are sufficient for exact recovery with high probability. Empirical performance comparisons establish significant computational advantages for IHT and FIHT. In particular, numerical simulations on $3$D arrays demonstrate the capability of FIHT on handling large and high-dimensional real data

On the accuracy of solving confluent Prony systems

In this paper we consider several nonlinear systems of algebraic equations which can be called "Prony-type". These systems arise in various reconstruction problems in several branches of theoretical and applied mathematics, such as frequency estimation and nonlinear Fourier inversion. Consequently, the question of stability of solution with respect to errors in the right-hand side becomes critical for the success of any particular application. We investigate the question of "maximal possible accuracy" of solving Prony-type systems, putting stress on the "local" behavior which approximates situations with low absolute measurement error. The accuracy estimates are formulated in very simple geometric terms, shedding some light on the structure of the problem. Numerical tests suggest that "global" solution techniques such as Prony's algorithm and ESPRIT method are suboptimal when compared to this theoretical "best local" behavior