7,066 research outputs found
Appearance Based Stage Recognition of Drosophila Embryos
Stages in Drosophila development denote the time after fertilization at which certain specific events occur in the developmental cycle. Stage information of a host embryo, as well as spatial information of a gene expression region is indispensable input for the discovery of the pattern of gene-gene interaction. Manual labeling of stages is becoming a bottleneck under the circumstance of high throughput embryo images. Automatic recognition based on the appearances of embryos is becoming a more desirable scheme. This problem, however, is very challenging due to severe variations of illumination and gene expressions. In this research thesis, we propose an appearance based recognition method using orientation histograms and Gabor filter. Furthermore, we apply Principal Component Analysis to reduce the dimension of the low-level features, aiming to accelerate the speed of recognition. With the experiments on BDGP images, we show the promise of the proposed method
Geometric deep learning: going beyond Euclidean data
Many scientific fields study data with an underlying structure that is a
non-Euclidean space. Some examples include social networks in computational
social sciences, sensor networks in communications, functional networks in
brain imaging, regulatory networks in genetics, and meshed surfaces in computer
graphics. In many applications, such geometric data are large and complex (in
the case of social networks, on the scale of billions), and are natural targets
for machine learning techniques. In particular, we would like to use deep
neural networks, which have recently proven to be powerful tools for a broad
range of problems from computer vision, natural language processing, and audio
analysis. However, these tools have been most successful on data with an
underlying Euclidean or grid-like structure, and in cases where the invariances
of these structures are built into networks used to model them. Geometric deep
learning is an umbrella term for emerging techniques attempting to generalize
(structured) deep neural models to non-Euclidean domains such as graphs and
manifolds. The purpose of this paper is to overview different examples of
geometric deep learning problems and present available solutions, key
difficulties, applications, and future research directions in this nascent
field
Robust Orthogonal Complement Principal Component Analysis
Recently, the robustification of principal component analysis has attracted
lots of attention from statisticians, engineers and computer scientists. In
this work we study the type of outliers that are not necessarily apparent in
the original observation space but can seriously affect the principal subspace
estimation. Based on a mathematical formulation of such transformed outliers, a
novel robust orthogonal complement principal component analysis (ROC-PCA) is
proposed. The framework combines the popular sparsity-enforcing and low rank
regularization techniques to deal with row-wise outliers as well as
element-wise outliers. A non-asymptotic oracle inequality guarantees the
accuracy and high breakdown performance of ROC-PCA in finite samples. To tackle
the computational challenges, an efficient algorithm is developed on the basis
of Stiefel manifold optimization and iterative thresholding. Furthermore, a
batch variant is proposed to significantly reduce the cost in ultra high
dimensions. The paper also points out a pitfall of a common practice of SVD
reduction in robust PCA. Experiments show the effectiveness and efficiency of
ROC-PCA in both synthetic and real data
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