Hybrid static/dynamic scheduling for already optimized dense matrix factorization

We present the use of a hybrid static/dynamic scheduling strategy of the task dependency graph for direct methods used in dense numerical linear algebra. This strategy provides a balance of data locality, load balance, and low dequeue overhead. We show that the usage of this scheduling in communication avoiding dense factorization leads to significant performance gains. On a 48 core AMD Opteron NUMA machine, our experiments show that we can achieve up to 64% improvement over a version of CALU that uses fully dynamic scheduling, and up to 30% improvement over the version of CALU that uses fully static scheduling. On a 16-core Intel Xeon machine, our hybrid static/dynamic scheduling approach is up to 8% faster than the version of CALU that uses a fully static scheduling or fully dynamic scheduling. Our algorithm leads to speedups over the corresponding routines for computing LU factorization in well known libraries. On the 48 core AMD NUMA machine, our best implementation is up to 110% faster than MKL, while on the 16 core Intel Xeon machine, it is up to 82% faster than MKL. Our approach also shows significant speedups compared with PLASMA on both of these systems

Metadata-Aware Query Processing over Data Streams

Many modern applications need to process queries over potentially infinite data streams to provide answers in real-time. This dissertation proposes novel techniques to optimize CPU and memory utilization in stream processing by exploiting metadata on streaming data or queries. It focuses on four topics: 1) exploiting stream metadata to optimize SPJ query operators via operator configuration, 2) exploiting stream metadata to optimize SPJ query plans via query-rewriting, 3) exploiting workload metadata to optimize parameterized queries via indexing, and 4) exploiting event constraints to optimize event stream processing via run-time early termination. The first part of this dissertation proposes algorithms for one of the most common and expensive query operators, namely join, to at runtime identify and purge no-longer-needed data from the state based on punctuations. Exploitations of the combination of punctuation and commonly-used window constraints are also studied. Extensive experimental evaluations demonstrate both reduction on memory usage and improvements on execution time due to the proposed strategies. The second part proposes herald-driven runtime query plan optimization techniques. We identify four query optimization techniques, design a lightweight algorithm to efficiently detect the optimization opportunities at runtime upon receiving heralds. We propose a novel execution paradigm to support multiple concurrent logical plans by maintaining one physical plan. Extensive experimental study confirms that our techniques significantly reduce query execution times. The third part deals with the shared execution of parameterized queries instantiated from a query template. We design a lightweight index mechanism to provide multiple access paths to data to facilitate a wide range of parameterized queries. To withstand workload fluctuations, we propose an index tuning framework to tune the index configurations in a timely manner. Extensive experimental evaluations demonstrate the effectiveness of the proposed strategies. The last part proposes event query optimization techniques by exploiting event constraints such as exclusiveness or ordering relationships among events extracted from workflows. Significant performance gains are shown to be achieved by our proposed constraint-aware event processing techniques

GPU Resource Optimization and Scheduling for Shared Execution Environments

General purpose graphics processing units have become a computing workhorse for a variety of data- and compute-intensive applications, from large supercomputing systems for massive data analytics to small, mobile embedded devices for autonomous vehicles. Making effective and efficient use of these processors traditionally relies on extensive programmer expertise to design and develop kernel methods which simultaneously trade off task decomposition and resource exploitation. Often, new architecture designs force code refinements in order to continue to achieve optimal performance. At the same time, not all applications require full utilization of the system to achieve that optimal performance. In this case, the increased capability of new architectures introduces an ever-widening gap between the level of resources necessary for optimal performance and the level necessary to maintain system efficiency. The ability to schedule and execute multiple independent tasks on a GPU, known generally as concurrent kernel execution, enables application programmers and system developers to balance application performance and system efficiency. Various approaches to develop both coarse- and fine-grained scheduling mechanisms to achieve a high degree of resource utilization and improved application performance have been studied. Most of these works focus on mechanisms for the management of compute resources, while a small percentage consider the data transfer channels. In this dissertation, we propose a pragmatic approach to scheduling and managing both types of resources – data transfer and compute – that is transparent to an application programmer and capable of providing near-optimal system performance. Furthermore, the approaches described herein rely on reinforcement learning methods, which enable the scheduling solutions to be flexible to a variety of factors, such as transient application behaviors, changing system designs, and tunable objective functions. Finally, we describe a framework for the practical implementation of learned scheduling policies to achieve high resource utilization and efficient system performance

Evaluation and Analysis of Different Aggregation and Hyperparameter Selection Methods for Federated Brain Tumor Segmentation

Availability of large, diverse, and multi-national datasets is crucial for the development of effective and clinically applicable AI systems in the medical imaging domain. However, forming a global model by bringing these datasets together at a central location, comes along with various data privacy and ownership problems. To alleviate these problems, several recent studies focus on the federated learning paradigm, a distributed learning approach for decentralized data. Federated learning leverages all the available data without any need for sharing collaborators’ data with each other or collecting them on a central server. Studies show that federated learning can provide competitive performance with conventional central training, while having a good generalization capability. In this work, we have investigated several federated learning approaches on the brain tumor segmentation problem. We explore different strategies for faster convergence and better performance which can also work on strong Non-IID cases

The hArtes Tool Chain

This chapter describes the different design steps needed to go from legacy code to a transformed application that can be efficiently mapped on the hArtes platform

A metadata-enhanced framework for high performance visual effects

This thesis is devoted to reducing the interactive latency of image processing computations in visual effects. Film and television graphic artists depend upon low-latency feedback to receive a visual response to changes in effect parameters. We tackle latency with a domain-specific optimising compiler which leverages high-level program metadata to guide key computational and memory hierarchy optimisations. This metadata encodes static and dynamic information about data dependence and patterns of memory access in the algorithms constituting a visual effect – features that are typically difficult to extract through program analysis – and presents it to the compiler in an explicit form. By using domain-specific information as a substitute for program analysis, our compiler is able to target a set of complex source-level optimisations that a vendor compiler does not attempt, before passing the optimised source to the vendor compiler for lower-level optimisation. Three key metadata-supported optimisations are presented. The first is an adaptation of space and schedule optimisation – based upon well-known compositions of the loop fusion and array contraction transformations – to the dynamic working sets and schedules of a runtimeparameterised visual effect. This adaptation sidesteps the costly solution of runtime code generation by specialising static parameters in an offline process and exploiting dynamic metadata to adapt the schedule and contracted working sets at runtime to user-tunable parameters. The second optimisation comprises a set of transformations to generate SIMD ISA-augmented source code. Our approach differs from autovectorisation by using static metadata to identify parallelism, in place of data dependence analysis, and runtime metadata to tune the data layout to user-tunable parameters for optimal aligned memory access. The third optimisation comprises a related set of transformations to generate code for SIMT architectures, such as GPUs. Static dependence metadata is exploited to guide large-scale parallelisation for tens of thousands of in-flight threads. Optimal use of the alignment-sensitive, explicitly managed memory hierarchy is achieved by identifying inter-thread and intra-core data sharing opportunities in memory access metadata. A detailed performance analysis of these optimisations is presented for two industrially developed visual effects. In our evaluation we demonstrate up to 8.1x speed-ups on Intel and AMD multicore CPUs and up to 6.6x speed-ups on NVIDIA GPUs over our best hand-written implementations of these two effects. Programmability is enhanced by automating the generation of SIMD and SIMT implementations from a single programmer-managed scalar representation