Minimum entropy restoration using FPGAs and high-level techniques

One of the greatest perceived barriers to the widespread use of FPGAs in image processing is the difficulty for application specialists of developing algorithms on reconfigurable hardware. Minimum entropy deconvolution (MED) techniques have been shown to be effective in the restoration of star-field images. This paper reports on an attempt to implement a MED algorithm using simulated annealing, first on a microprocessor, then on an FPGA. The FPGA implementation uses DIME-C, a C-to-gates compiler, coupled with a low-level core library to simplify the design task. Analysis of the C code and output from the DIME-C compiler guided the code optimisation. The paper reports on the design effort that this entailed and the resultant performance improvements

An empirical evaluation of High-Level Synthesis languages and tools for database acceleration

High Level Synthesis (HLS) languages and tools are emerging as the most promising technique to make FPGAs more accessible to software developers. Nevertheless, picking the most suitable HLS for a certain class of algorithms depends on requirements such as area and throughput, as well as on programmer experience. In this paper, we explore the different trade-offs present when using a representative set of HLS tools in the context of Database Management Systems (DBMS) acceleration. More specifically, we conduct an empirical analysis of four representative frameworks (Bluespec SystemVerilog, Altera OpenCL, LegUp and Chisel) that we utilize to accelerate commonly-used database algorithms such as sorting, the median operator, and hash joins. Through our implementation experience and empirical results for database acceleration, we conclude that the selection of the most suitable HLS depends on a set of orthogonal characteristics, which we highlight for each HLS framework.Peer ReviewedPostprint (author’s final draft

FPGA Implementations Comparison of Neuro-cortical Inspired Convolution Processors for Spiking Systems

Image convolution operations in digital computer systems are usually very expensive operations in terms of resource consumption (processor resources and processing time) for an efficient Real-Time application. In these scenarios the visual information is divided in frames and each one has to be completely processed before the next frame arrives. Recently a new method for computing convolutions based on the neuro-inspired philosophy of spiking systems (Address-Event-Representation systems, AER) is achieving high performances. In this paper we present two FPGA implementations of AERbased convolution processors that are able to work with 64x64 images and programmable kernels of up to 11x11 elements. The main difference is the use of RAM for integrators in one solution and the absence of integrators in the second solution that is based on mapping operations. The maximum equivalent operation rate is 163.51 MOPS for 11x11 kernels, in a Xilinx Spartan 3 400 FPGA with a 50MHz clock. Formulations, hardware architecture, operation examples and performance comparison with frame-based convolution processors are presented and discussed.Ministerio de Ciencia e Innovación TEC2006-11730-C03-02Junta de Andalucía P06-TIC-0141

On the AER Convolution Processors for FPGA

Image convolution operations in digital computer systems are usually very expensive operations in terms of resource consumption (processor resources and processing time) for an efficient Real-Time application. In these scenarios the visual information is divided into frames and each one has to be completely processed before the next frame arrives in order to warranty the real-time. A spike-based philosophy for computing convolutions based on the neuro-inspired Address-Event- Representation (AER) is achieving high performances. In this paper we present two FPGA implementations of AER-based convolution processors for relatively small Xilinx FPGAs (Spartan-II 200 and Spartan-3 400), which process 64x64 images with 11x11 convolution kernels. The maximum equivalent operation rate that can be reached is 163.51 MOPS for 11x11 kernels, in a Xilinx Spartan 3 400 FPGA with a 50MHz clock. Formulations, hardware architecture, operation examples and performance comparison with frame-based convolution processors are presented and discussed.Ministerio de Ciencia e Innovación TEC2006-11730-C03-02Ministerio de Ciencia e Innovación TEC2009-10639-C04-02Junta de Andalucía P06-TIC-0141

FPGA implementations for parallel multidimensional filtering algorithms

PhD ThesisOne and multi dimensional raw data collections introduce noise and artifacts, which need to be recovered from degradations by an automated filtering system before, further machine analysis. The need for automating wide-ranged filtering applications necessitates the design of generic filtering architectures, together with the development of multidimensional and extensive convolution operators. Consequently, the aim of this thesis is to investigate the problem of automated construction of a generic parallel filtering system. Serving this goal, performance-efficient FPGA implementation architectures are developed to realize parallel one/multi-dimensional filtering algorithms. The proposed generic architectures provide a mechanism for fast FPGA prototyping of high performance computations to obtain efficiently implemented performance indices of area, speed, dynamic power, throughput and computation rates, as a complete package. These parallel filtering algorithms and their automated generic architectures tackle the major bottlenecks and limitations of existing multiprocessor systems in wordlength, input data segmentation, boundary conditions as well as inter-processor communications, in order to support high data throughput real-time applications of low-power architectures using a Xilinx Virtex-6 FPGA board. For one-dimensional raw signal filtering case, mathematical model and architectural development of the generalized parallel 1-D filtering algorithms are presented using the 1-D block filtering method. Five generic architectures are implemented on a Virtex-6 ML605 board, evaluated and compared. A complete set of results on area, speed, power, throughput and computation rates are obtained and discussed as performance indices for the 1-D convolution architectures. A successful application of parallel 1-D cross-correlation is demonstrated. For two dimensional greyscale/colour image processing cases, new parallel 2-D/3-D filtering algorithms are presented and mathematically modelled using input decimation and output image reconstruction by interpolation. Ten generic architectures are implemented on the Virtex-6 ML605 board, evaluated and compared. Key results on area, speed, power, throughput and computation rate are obtained and discussed as performance indices for the 2-D convolution architectures. 2-D image reconfigurable processors are developed and implemented using single, dual and quad MAC FIR units. 3-D Colour image processors are devised to act as 3-D colour filtering engines. A 2-D cross-correlator parallel engine is successfully developed as a parallel 2-D matched filtering algorithm for locating any MRI slice within a MRI data stack library. Twelve 3-D MRI filtering operators are plugged in and adapted to be suitable for biomedical imaging, including 3-D edge operators and 3-D noise smoothing operators. Since three dimensional greyscale/colour volumetric image applications are computationally intensive, a new parallel 3-D/4-D filtering algorithm is presented and mathematically modelled using volumetric data image segmentation by decimation and output reconstruction by interpolation, after simultaneously and independently performing 3-D filtering. Eight generic architectures are developed and implemented on the Virtex-6 board, including 3-D spatial and FFT convolution architectures. Fourteen 3-D MRI filtering operators are plugged and adapted for this particular biomedical imaging application, including 3-D edge operators and 3-D noise smoothing operators. Three successful applications are presented in 4-D colour MRI (fMRI) filtering processors, k-space MRI volume data filter and 3-D cross-correlator.IRAQI Government

Towards an Energy-Aware Framework for Application Development and Execution in Heterogeneous Parallel Architectures

The Transparent heterogeneous hardware Architecture deployment for eNergy Gain in Operation (TANGO) project’s goal is to characterise factors which affect power consumption in software development and operation for Heterogeneous Parallel Hardware (HPA) environments. Its main contribution is the combination of requirements engineering and design modelling for self-adaptive software systems, with power consumption awareness in relation to these environments. The energy efficiency and application quality factors are integrated into the application lifecycle (design, implementation and operation). To support this, the key novelty of the project is a reference architecture and its implementation. Moreover, a programming model with built-in support for various hardware architectures including heterogeneous clusters, heterogeneous chips and programmable logic devices is provided. This leads to a new cross-layer programming approach for heterogeneous parallel hardware architectures featuring software and hardware modelling. Application power consumption and performance, data location and time-criticality optimization, as well as security and dependability requirements on the target hardware architecture are supported by the architecture

An FPGA Based Implementation of the Exact Stochastic Simulation Algorithm

Mathematical and statistical modeling of biological systems is a desired goal for many years. Many biochemical models are often evaluated using a deterministic approach, which uses differential equations to describe the chemical interactions. However, such an approach is inaccurate for small species populations as it neglects the discrete representation of population values, presents the possibility of negative populations, and does not represent the stochastic nature of biochemical systems. The Stochastic Simulation Algorithm (SSA) developed by Gillespie is able to properly account for these inherent noise fluctuations. Due to the stochastic nature of the Monte Carlo simulations, large numbers of simulations must be run in order to get accurate statistics for the species populations and reactions. However, the algorithm tends to be computationally heavy and leads to long simulation runtimes for large systems. Therefore, this thesis explores implementing the SSA on a Field Programmable Gate Array (FPGA) to improve performance. Employing the Field programmable Gate Arrays exploits the parallelism present in the SSA, providing speedup over the software implementations that execute sequentially. In contrast to prior work that requires re-construction and re-synthesis of the design to simulate a new biochemical system, this work explores the use of reconfigurable hardware in implementing a generic biochemical simulator