Multitriangulations, pseudotriangulations and primitive sorting networks

We study the set of all pseudoline arrangements with contact points which cover a given support. We define a natural notion of flip between these arrangements and study the graph of these flips. In particular, we provide an enumeration algorithm for arrangements with a given support, based on the properties of certain greedy pseudoline arrangements and on their connection with sorting networks. Both the running time per arrangement and the working space of our algorithm are polynomial. As the motivation for this work, we provide in this paper a new interpretation of both pseudotriangulations and multitriangulations in terms of pseudoline arrangements on specific supports. This interpretation explains their common properties and leads to a natural definition of multipseudotriangulations, which generalizes both. We study elementary properties of multipseudotriangulations and compare them to iterations of pseudotriangulations.Comment: 60 pages, 40 figures; minor corrections and improvements of presentatio

Drawing Arrangement Graphs In Small Grids, Or How To Play Planarity

We describe a linear-time algorithm that finds a planar drawing of every graph of a simple line or pseudoline arrangement within a grid of area O(n^{7/6}). No known input causes our algorithm to use area \Omega(n^{1+\epsilon}) for any \epsilon>0; finding such an input would represent significant progress on the famous k-set problem from discrete geometry. Drawing line arrangement graphs is the main task in the Planarity puzzle.Comment: 12 pages, 8 figures. To appear at 21st Int. Symp. Graph Drawing, Bordeaux, 201

Upper and Lower Bounds on Long Dual-Paths in Line Arrangements

Given a line arrangement $\cal A$ with $n$ lines, we show that there exists a path of length $n^2/3 - O(n)$ in the dual graph of $\cal A$ formed by its faces. This bound is tight up to lower order terms. For the bicolored version, we describe an example of a line arrangement with $3k$ blue and $2k$ red lines with no alternating path longer than $14k$. Further, we show that any line arrangement with $n$ lines has a coloring such that it has an alternating path of length $\Omega (n^2/ \log n)$. Our results also hold for pseudoline arrangements.Comment: 19 page

Flip Graph Connectivity for Arrangements of Pseudolines and Pseudocircles

Flip graphs of combinatorial and geometric objects are at the heart of many deep structural insights and connections between different branches of discrete mathematics and computer science. They also provide a natural framework for the study of reconfiguration problems. We study flip graphs of arrangements of pseudolines and of arrangements of pseudocircles, which are combinatorial generalizations of lines and circles, respectively. In both cases we consider triangle flips as local transformation and prove conjectures regarding their connectivity. In the case of $n$ pseudolines we show that the connectivity of the flip graph equals its minimum degree, which is exactly $n-2$. For the proof we introduce the class of shellable line arrangements, which serve as reference objects for the construction of disjoint paths. In fact, shellable arrangements are elements of a flip graph of line arrangements which are vertices of a polytope (Felsner and Ziegler; DM 241 (2001), 301--312). This polytope forms a cluster of good connectivity in the flip graph of pseudolines. In the case of pseudocircles we show that triangle flips induce a connected flip graph on \emph{intersecting} arrangements and also on cylindrical intersecting arrangements. The result for cylindrical arrangements is used in the proof for intersecting arrangements. We also show that in both settings the diameter of the flip graph is in $\Theta(n^3)$. Our constructions make essential use of variants of the sweeping lemma for pseudocircle arrangements (Snoeyink and Hershberger; Proc.\ SoCG 1989: 354--363). We finally study cylindrical arrangements in their own right and provide new combinatorial characterizations of this class

The brick polytope of a sorting network

The associahedron is a polytope whose graph is the graph of flips on triangulations of a convex polygon. Pseudotriangulations and multitriangulations generalize triangulations in two different ways, which have been unified by Pilaud and Pocchiola in their study of flip graphs on pseudoline arrangements with contacts supported by a given sorting network. In this paper, we construct the brick polytope of a sorting network, obtained as the convex hull of the brick vectors associated to each pseudoline arrangement supported by the network. We combinatorially characterize the vertices of this polytope, describe its faces, and decompose it as a Minkowski sum of matroid polytopes. Our brick polytopes include Hohlweg and Lange's many realizations of the associahedron, which arise as brick polytopes for certain well-chosen sorting networks. We furthermore discuss the brick polytopes of sorting networks supporting pseudoline arrangements which correspond to multitriangulations of convex polygons: our polytopes only realize subgraphs of the flip graphs on multitriangulations and they cannot appear as projections of a hypothetical multiassociahedron.Comment: 36 pages, 25 figures; Version 2 refers to the recent generalization of our results to spherical subword complexes on finite Coxeter groups (http://arxiv.org/abs/1111.3349

Combinatorial geometry of neural codes, neural data analysis, and neural networks

This dissertation explores applications of discrete geometry in mathematical neuroscience. We begin with convex neural codes, which model the activity of hippocampal place cells and other neurons with convex receptive fields. In Chapter 4, we introduce order-forcing, a tool for constraining convex realizations of codes, and use it to construct new examples of non-convex codes with no local obstructions. In Chapter 5, we relate oriented matroids to convex neural codes, showing that a code has a realization with convex polytopes iff it is the image of a representable oriented matroid under a neural code morphism. We also show that determining whether a code is convex is at least as difficult as determining whether an oriented matroid is representable, implying that the problem of determining whether a code is convex is NP-hard. Next, we turn to the problem of the underlying rank of a matrix. This problem is motivated by the problem of determining the dimensionality of (neural) data which has been corrupted by an unknown monotone transformation. In Chapter 6, we introduce two tools for computing underlying rank, the minimal nodes and the Radon rank. We apply these to analyze calcium imaging data from a larval zebrafish. In Chapter 7, we explore the underlying rank in more detail, establish connections to oriented matroid theory, and show that computing underlying rank is also NP-hard. Finally, we study the dynamics of threshold-linear networks (TLNs), a simple model of the activity of neural circuits. In Chapter 9, we describe the nullcline arrangement of a threshold linear network, and show that a subset of its chambers are an attracting set. In Chapter 10, we focus on combinatorial threshold linear networks (CTLNs), which are TLNs defined from a directed graph. We prove that if the graph of a CTLN is a directed acyclic graph, then all trajectories of the CTLN approach a fixed point.Comment: 193 pages, 69 figure

Associahedra via spines

An associahedron is a polytope whose vertices correspond to triangulations of a convex polygon and whose edges correspond to flips between them. Using labeled polygons, C. Hohlweg and C. Lange constructed various realizations of the associahedron with relevant properties related to the symmetric group and the classical permutahedron. We introduce the spine of a triangulation as its dual tree together with a labeling and an orientation. This notion extends the classical understanding of the associahedron via binary trees, introduces a new perspective on C. Hohlweg and C. Lange's construction closer to J.-L. Loday's original approach, and sheds light upon the combinatorial and geometric properties of the resulting realizations of the associahedron. It also leads to noteworthy proofs which shorten and simplify previous approaches.Comment: 27 pages, 11 figures. Version 5: minor correction

Brick polytopes of spherical subword complexes and generalized associahedra

International audienceWe generalize the brick polytope of V. Pilaud and F. Santos to spherical subword complexes for finite Coxeter groups. This construction provides polytopal realizations for a certain class of subword complexes containing all cluster complexes of finite types. For the latter, the brick polytopes turn out to coincide with the known realizations of generalized associahedra, thus opening new perspectives on these constructions. This new approach yields in particular the vertex description of generalized associahedra, a Minkowski sum decomposition into Coxeter matroid polytopes, and a combinatorial description of the exchange matrix of any cluster in a finite type cluster algebra