Table-to-Text: Generating Descriptive Text for Scientific Tables from Randomized Controlled Trials

Unprecedented amounts of data have been generated in the biomedical domain, and the bottleneck for biomedical research has shifted from data generation to data management, interpretation, and communication. Therefore, it is highly desirable to develop systems to assist in text generation from biomedical data, which will greatly improve the dissemination of scientific findings. However, very few studies have investigated issues of data-to-text generation in the biomedical domain. Here I present a systematic study for generating descriptive text from tables in randomized clinical trials (RCT) articles, which includes: (1) an information model for representing RCT tables; (2) annotated corpora containing pairs of RCT table and descriptive text, and labeled structural and semantic information of RCT tables; (3) methods for recognizing structural and semantic information of RCT tables; (4) methods for generating text from RCT tables, evaluated by a user study on three aspects: relevance, grammatical quality, and matching. The proposed hybrid text generation method achieved a low bilingual evaluation understudy (BLEU) score of 5.69; but human review achieved scores of 9.3, 9.9 and 9.3 for relevance, grammatical quality and matching, respectively, which are comparable to review of original human-written text. To the best of our knowledge, this is the first study to generate text from scientific tables in the biomedical domain. The proposed information model, labeled corpora and developed methods for recognizing tables and generating descriptive text could also facilitate other biomedical and informatics research and applications

User Guidance for Efficient Fact Checking

The Web constitutes a valuable source of information. In recent years, it fostered the construction of large-scale knowledge bases, such as Freebase, YAGO, and DBpedia. The open nature of the Web, with content potentially being generated by everyone, however, leads to inaccuracies and misinformation. Construction and maintenance of a knowledge base thus has to rely on fact checking, an assessment of the credibility of facts. Due to an inherent lack of ground truth information, such fact checking cannot be done in a purely automated manner, but requires human involvement. In this paper, we propose a comprehensive framework to guide users in the validation of facts, striving for a minimisation of the invested effort. Our framework is grounded in a novel probabilistic model that combines user input with automated credibility inference. Based thereon, we show how to guide users in fact checking by identifying the facts for which validation is most beneficial. Moreover, our framework includes techniques to reduce the manual effort invested in fact checking by determining when to stop the validation and by supporting efficient batching strategies. We further show how to handle fact checking in a streaming setting. Our experiments with three real-world datasets demonstrate the efficiency and effectiveness of our framework: A knowledge base of high quality, with a precision of above 90\%, is constructed with only a half of the validation effort required by baseline techniques

Text-image synergy for multimodal retrieval and annotation

Text and images are the two most common data modalities found on the Internet. Understanding the synergy between text and images, that is, seamlessly analyzing information from these modalities may be trivial for humans, but is challenging for software systems. In this dissertation we study problems where deciphering text-image synergy is crucial for finding solutions. We propose methods and ideas that establish semantic connections between text and images in multimodal contents, and empirically show their effectiveness in four interconnected problems: Image Retrieval, Image Tag Refinement, Image-Text Alignment, and Image Captioning. Our promising results and observations open up interesting scopes for future research involving text-image data understanding.Text and images are the two most common data modalities found on the Internet. Understanding the synergy between text and images, that is, seamlessly analyzing information from these modalities may be trivial for humans, but is challenging for software systems. In this dissertation we study problems where deciphering text-image synergy is crucial for finding solutions. We propose methods and ideas that establish semantic connections between text and images in multimodal contents, and empirically show their effectiveness in four interconnected problems: Image Retrieval, Image Tag Refinement, Image-Text Alignment, and Image Captioning. Our promising results and observations open up interesting scopes for future research involving text-image data understanding.Text und Bild sind die beiden häufigsten Arten von Inhalten im Internet. Während es für Menschen einfach ist, gerade aus dem Zusammenspiel von Text- und Bildinhalten Informationen zu erfassen, stellt diese kombinierte Darstellung von Inhalten Softwaresysteme vor große Herausforderungen. In dieser Dissertation werden Probleme studiert, für deren Lösung das Verständnis des Zusammenspiels von Text- und Bildinhalten wesentlich ist. Es werden Methoden und Vorschläge präsentiert und empirisch bewertet, die semantische Verbindungen zwischen Text und Bild in multimodalen Daten herstellen. Wir stellen in dieser Dissertation vier miteinander verbundene Text- und Bildprobleme vor: • Bildersuche. Ob Bilder anhand von textbasierten Suchanfragen gefunden werden, hängt stark davon ab, ob der Text in der Nähe des Bildes mit dem der Anfrage übereinstimmt. Bilder ohne textuellen Kontext, oder sogar mit thematisch passendem Kontext, aber ohne direkte Übereinstimmungen der vorhandenen Schlagworte zur Suchanfrage, können häufig nicht gefunden werden. Zur Abhilfe schlagen wir vor, drei Arten von Informationen in Kombination zu nutzen: visuelle Informationen (in Form von automatisch generierten Bildbeschreibungen), textuelle Informationen (Stichworte aus vorangegangenen Suchanfragen), und Alltagswissen. • Verbesserte Bildbeschreibungen. Bei der Objekterkennung durch Computer Vision kommt es des Öfteren zu Fehldetektionen und Inkohärenzen. Die korrekte Identifikation von Bildinhalten ist jedoch eine wichtige Voraussetzung für die Suche nach Bildern mittels textueller Suchanfragen. Um die Fehleranfälligkeit bei der Objekterkennung zu minimieren, schlagen wir vor Alltagswissen einzubeziehen. Durch zusätzliche Bild-Annotationen, welche sich durch den gesunden Menschenverstand als thematisch passend erweisen, können viele fehlerhafte und zusammenhanglose Erkennungen vermieden werden. • Bild-Text Platzierung. Auf Internetseiten mit Text- und Bildinhalten (wie Nachrichtenseiten, Blogbeiträge, Artikel in sozialen Medien) werden Bilder in der Regel an semantisch sinnvollen Positionen im Textfluss platziert. Wir nutzen dies um ein Framework vorzuschlagen, in dem relevante Bilder ausgesucht werden und mit den passenden Abschnitten eines Textes assoziiert werden. • Bildunterschriften. Bilder, die als Teil von multimodalen Inhalten zur Verbesserung der Lesbarkeit von Texten dienen, haben typischerweise Bildunterschriften, die zum Kontext des umgebenden Texts passen. Wir schlagen vor, den Kontext beim automatischen Generieren von Bildunterschriften ebenfalls einzubeziehen. Üblicherweise werden hierfür die Bilder allein analysiert. Wir stellen die kontextbezogene Bildunterschriftengenerierung vor. Unsere vielversprechenden Beobachtungen und Ergebnisse eröffnen interessante Möglichkeiten für weitergehende Forschung zur computergestützten Erfassung des Zusammenspiels von Text- und Bildinhalten

Inferring Complex Activities for Context-aware Systems within Smart Environments

The rising ageing population worldwide and the prevalence of age-related conditions such as physical fragility, mental impairments and chronic diseases have significantly impacted the quality of life and caused a shortage of health and care services. Over-stretched healthcare providers are leading to a paradigm shift in public healthcare provisioning. Thus, Ambient Assisted Living (AAL) using Smart Homes (SH) technologies has been rigorously investigated to help address the aforementioned problems. Human Activity Recognition (HAR) is a critical component in AAL systems which enables applications such as just-in-time assistance, behaviour analysis, anomalies detection and emergency notifications. This thesis is aimed at investigating challenges faced in accurately recognising Activities of Daily Living (ADLs) performed by single or multiple inhabitants within smart environments. Specifically, this thesis explores five complementary research challenges in HAR. The first study contributes to knowledge by developing a semantic-enabled data segmentation approach with user-preferences. The second study takes the segmented set of sensor data to investigate and recognise human ADLs at multi-granular action level; coarse- and fine-grained action level. At the coarse-grained actions level, semantic relationships between the sensor, object and ADLs are deduced, whereas, at fine-grained action level, object usage at the satisfactory threshold with the evidence fused from multimodal sensor data is leveraged to verify the intended actions. Moreover, due to imprecise/vague interpretations of multimodal sensors and data fusion challenges, fuzzy set theory and fuzzy web ontology language (fuzzy-OWL) are leveraged. The third study focuses on incorporating uncertainties caused in HAR due to factors such as technological failure, object malfunction, and human errors. Hence, existing studies uncertainty theories and approaches are analysed and based on the findings, probabilistic ontology (PR-OWL) based HAR approach is proposed. The fourth study extends the first three studies to distinguish activities conducted by more than one inhabitant in a shared smart environment with the use of discriminative sensor-based techniques and time-series pattern analysis. The final study investigates in a suitable system architecture with a real-time smart environment tailored to AAL system and proposes microservices architecture with sensor-based off-the-shelf and bespoke sensing methods. The initial semantic-enabled data segmentation study was evaluated with 100% and 97.8% accuracy to segment sensor events under single and mixed activities scenarios. However, the average classification time taken to segment each sensor events have suffered from 3971ms and 62183ms for single and mixed activities scenarios, respectively. The second study to detect fine-grained-level user actions was evaluated with 30 and 153 fuzzy rules to detect two fine-grained movements with a pre-collected dataset from the real-time smart environment. The result of the second study indicate good average accuracy of 83.33% and 100% but with the high average duration of 24648ms and 105318ms, and posing further challenges for the scalability of fusion rule creations. The third study was evaluated by incorporating PR-OWL ontology with ADL ontologies and Semantic-Sensor-Network (SSN) ontology to define four types of uncertainties presented in the kitchen-based activity. The fourth study illustrated a case study to extended single-user AR to multi-user AR by combining RFID tags and fingerprint sensors discriminative sensors to identify and associate user actions with the aid of time-series analysis. The last study responds to the computations and performance requirements for the four studies by analysing and proposing microservices-based system architecture for AAL system. A future research investigation towards adopting fog/edge computing paradigms from cloud computing is discussed for higher availability, reduced network traffic/energy, cost, and creating a decentralised system. As a result of the five studies, this thesis develops a knowledge-driven framework to estimate and recognise multi-user activities at fine-grained level user actions. This framework integrates three complementary ontologies to conceptualise factual, fuzzy and uncertainties in the environment/ADLs, time-series analysis and discriminative sensing environment. Moreover, a distributed software architecture, multimodal sensor-based hardware prototypes, and other supportive utility tools such as simulator and synthetic ADL data generator for the experimentation were developed to support the evaluation of the proposed approaches. The distributed system is platform-independent and currently supported by an Android mobile application and web-browser based client interfaces for retrieving information such as live sensor events and HAR results