Measuring Individual Tree Height and Crown Diameter for Mangrove Trees with Airborne Lidar Data

Mangroves are unique ecosystems that provide valuable coastal area habitats, protection, and services. Access to observing mangrove forests is typically difficult on the ground. Therefore, it is of interest to develop and evaluate remote sensing methods that enable us to obtain accurate information on the structure of mangrove forests and to monitor their condition in time. The main objective of this study was to develop a methodology for processing airborne lidar data for measuring height and crown diameter for mangrove forests in the north-eastern coastal areas of Brazil. Specific objectives were to: (1) evaluate the most appropriate lidar data processing approach, such as area-based or individual tree methods, (2) investigate the most appropriate parameters for lidar-derived data products when estimating height and crown diameter, such as the spatial resolution of canopy height models and ground elevation models; and (3) compare the accuracy of lidar estimates to field measurements of height and crown diameter. The lidar dataset was acquired over mangrove forest of the northeast of Brazil. The crown diameter was calculated as the average of two values measured along two perpendicular directions from the location of each tree top by fitting a fourth-degree polynomial on both profiles. The lidar-derived tree measurements were used with regression models and cross-validation to estimate plot level field-measured crown diameter. Root mean square error, linear regression and the Nash-Sutcliffe coefficient were also used to compare lidar height and field height. The mean of lidar-estimated tree height was 9,48m and the mean of field tree height was 8.44m. The correlation between lidar tree height and field tree height was r= 0.60, E=-0.06 and RMSE= 2.8. The correlation between height and crown diameter needed to parameterized the individual tree identification software obtained for 32 trees was r= 0.83 and determination coefficient was r2 = 0.69. The results of the current study show that lidar data could be used to estimate height and average crown diameter of mangrove trees and to improve estimates of other mangrove forest biophysical parameters of interest by focusing at the individual tree level. The research presented in this study contributes to the overall knowledge of using lidar remote sensing to measure and monitor mangrove forests

Structure, Aboveground Biomass, and Soil Characterization of Avicennia marina in Eastern Mangrove Lagoon National Park, Abu Dhabi

Mangrove forests are national treasures of the United Arab Emirates (UAE) and other arid countries with limited forested areas. Mangroves form a crucial part of the coastal ecosystem and provide numerous benefits to society, economy, and especially the environment. Mangrove trees, specifically Avicennia marina, are studied in their native habitat in order to characterize their population structure, aboveground biomass, and soil properties. This study focused on Eastern Mangrove Lagoon National Park in Abu Dhabi, which was the first mangrove protected area to be designated in UAE. In situ measurements were collected to estimate Avicennia marina status, mortality rate (%), height (m), crown spread (m), stem number, diameter at breast height (cm), basal area (m), and aboveground biomass (t ha-1). Small-footprint aerial light detection and ranging (LIDAR) data acquired by UAE were processed to characterize mangrove canopy height and aboveground biomass density. This included extraction of LIDAR-derived height percentile statistics, segmentation of the forest into structurally homogenous units, and development of regression relationships between in situ reference and remote sensing data using a machine learning approach. Anin situ soil survey was conducted to examine the soils\u27 physical and chemical properties, fertility status, and organic matter. The data of soil survey were used to create soil maps to evaluate key characteristics of soils, and their influence on Avicennia marina in Eastern Mangrove Lagoon National Park. The results of this study provide new insights into Avicennia marina canopy population, structure, aboveground biomass, and soil properties in Abu Dhabi, as data in such arid environments is lacking. This valuable information can help in managing and preserving this unique ecosystem

On the use of rapid-scan, low point density terrestrial laser scanning (TLS) for structural assessment of complex forest environments

Forests fulfill an important role in natural ecosystems, e.g., they provide food, fiber, habitat, and biodiversity, all of which contribute to stable ecosystems. Assessing and modeling the structure and characteristics in forests can lead to a better understanding and management of these resources. Traditional methods for collecting forest traits, known as “forest inventory”, is achieved using rough proxies, such as stem diameter, tree height, and foliar coverage; such parameters are limited in their ability to capture fine-scale structural variation in forest environments. It is in this context that terrestrial laser scanning (TLS) has come to the fore as a tool for addressing the limitations of traditional forest structure evaluation methods. However, there is a need for improving TLS data processing methods. In this work, we developed algorithms to assess the structure of complex forest environments – defined by their stem density, intricate root and stem structures, uneven-aged nature, and variable understory - using data collected by a low-cost, portable TLS system, the Compact Biomass Lidar (CBL). The objectives of this work are listed as follow: 1. Assess the utility of terrestrial lidar scanning (TLS) to accurately map elevation changes (sediment accretion rates) in mangrove forest; 2. Evaluate forest structural attributes, e.g., stems and roots, in complex forest environments toward biophysical characterization of such forests; and 3. Assess canopy-level structural traits (leaf area index; leaf area density) in complex forest environments to estimate biomass in rapidly changing environments. The low-cost system used in this research provides lower-resolution data, in terms of scan angular resolution and resulting point density, when compared to higher-cost commercial systems. As a result, the algorithms developed for evaluating the data collected by such systems should be robust to issues caused by low-resolution 3D point cloud data. The data used in various parts of this work were collected from three mangrove forests on the western Pacific island of Pohnpei in the Federated States of Micronesia, as well as tropical forests in Hawai’i, USA. Mangrove forests underscore the economy of this region, where more than half of the annual household income is derived from these forests. However, these mangrove forests are endangered by sea level rise, which necessitates an evaluation of the resilience of mangrove forests to climate change in order to better protect and manage these ecosystems. This includes the preservation of positive sediment accretion rates, and stimulating the process of root growth, sedimentation, and peat development, all of which are influenced by the forest floor elevation, relative to sea level. Currently, accretion rates are measured using surface elevation tables (SETs), which are posts permanently placed in mangrove sediments. The forest floor is measured annually with respect to the height of the SETs to evaluate changes in elevation (Cahoon et al. 2002). In this work, we evaluated the ability of the CBL system for measuring such elevation changes, to address objective #1. Digital Elevation Models (DEMs) were produced for plots, based on the point cloud resulted from co-registering eight scans, spaced 45 degree, per plot. DEMs are refined and produced using Cloth Simulation Filtering (CSF) and kriging interpolation. CSF was used because it minimizes the user input parameters, and kriging was chosen for this study due its consideration of the overall spatial arrangement of the points using semivariogram analysis, which results in a more robust model. The average consistency of the TLS-derived elevation change was 72%, with and RMSE value of 1.36 mm. However, what truly makes the TLS method more tenable, is the lower standard error (SE) values when compared to manual methods (10-70x lower). In order to achieve our second objective, we assessed structural characteristics of the above-mentioned mangrove forest and also for tropical forests in Hawaii, collected with the same CBL scanner. The same eight scans per plot (20 plots) were co-registered using pairwise registration and the Iterative Closest Point (ICP). We then removed the higher canopy using a normal change rate assessment algorithm. We used a combination of geometric classification techniques, based on the angular orientation of the planes fitted to points (facets), and machine learning 3D segmentation algorithms to detect tree stems and above-ground roots. Mangrove forests are complex forest environments, containing above-ground root mass, which can create confusion for both ground detection and structural assessment algorithms. As a result, we needed to train a supporting classifier on the roots to detect which root lidar returns were classified as stems. The accuracy and precision values for this classifier were assessed via manual investigation of the classification results in all 20 plots. The accuracy and precision for stem classification were found to be 82% and 77%, respectively. The same values for root detection were 76% and 68%, respectively. We simulated the stems using alpha shapes in order to assess their volume in the final step. The consistency of the volume evaluation was found to be 85%. This was obtained by comparing the mean stem volume (m3/ha) from field data and the TLS data in each plot. The reported accuracy is the average value for all 20 plots. Additionally, we compared the diameter-at-breast-height (DBH), recorded in the field, with the TLS-derived DBH to obtain a direct measure of the precision of our stem models. DBH evaluation resulted in an accuracy of 74% and RMSE equaled 7.52 cm. This approach can be used for automatic stem detection and structural assessment in a complex forest environment, and could contribute to biomass assessment in these rapidly changing environments. These stem and root structural assessment efforts were complemented by efforts to estimate canopy-level structural attributes of the tropical Hawai’i forest environment; we specifically estimated the leaf area index (LAI), by implementing a density-based approach. 242 scans were collected using the portable low-cost TLS (CBL), in a Hawaii Volcano National Park (HAVO) flux tower site. LAI was measured for all the plots in the site, using an AccuPAR LP-80 Instrument. The first step in this work involved detection of the higher canopy, using normal change rate assessment. After segmenting the higher canopy from the lidar point clouds, we needed to measure Leaf Area Density (LAD), using a voxel-based approach. We divided the canopy point cloud into five layers in the Z direction, after which each of these five layers were divided into voxels in the X direction. The sizes of these voxels were constrained based on interquartile analysis and the number of points in each voxel. We hypothesized that the power returned to the lidar system from woody materials, like branches, exceeds that from leaves, due to the liquid water absorption of the leaves and higher reflectivity for woody material at the 905 nm lidar wavelength. We evaluated leafy and woody materials using images from projected point clouds and determined the density of these regions to support our hypothesis. The density of points in a 3D grid size of 0.1 m, which was determined by investigating the size of the branches in the lower portion of the higher canopy, was calculated in each of the voxels. Note that “density” in this work is defined as the total number of points per grid cell, divided by the volume of that cell. Subsequently, we fitted a kernel density estimator to these values. The threshold was set based on half of the area under the curve in each of the distributions. The grid cells with a density below the threshold were labeled as leaves, while those cells with a density above the threshold were set as non-leaves. We then modeled the LAI using the point densities derived from TLS point clouds, achieving a R2 value of 0.88. We also estimated the LAI directly from lidar data by using the point densities and calculating leaf area density (LAD), which is defined as the total one-sided leaf area per unit volume. LAI can be obtained as the sum of the LAD values in all the voxels. The accuracy of LAI estimation was found to be 90%. Since the LAI values cannot be considered spatially independent throughout all the plots in this site, we performed a semivariogram analysis on the field-measured LAI data. This analysis showed that the LAI values can be assumed to be independent in plots that are at least 30 m apart. As a result, we divided the data into six subsets, where each of the plots were 30 meter spaced for each subset. LAI model R2 values for these subsets ranged between 0.84 - 0.96. The results bode well for using this method for automatic estimation of LAI values in complex forest environments, using a low-cost, low point density, rapid-scan TLS

Remote Sensing of Ecology, Biodiversity and Conservation: A Review from the Perspective of Remote Sensing Specialists

Remote sensing, the science of obtaining information via noncontact recording, has swept the fields of ecology, biodiversity and conservation (EBC). Several quality review papers have contributed to this field. However, these papers often discuss the issues from the standpoint of an ecologist or a biodiversity specialist. This review focuses on the spaceborne remote sensing of EBC from the perspective of remote sensing specialists, i.e., it is organized in the context of state-of-the-art remote sensing technology, including instruments and techniques. Herein, the instruments to be discussed consist of high spatial resolution, hyperspectral, thermal infrared, small-satellite constellation, and LIDAR sensors; and the techniques refer to image classification, vegetation index (VI), inversion algorithm, data fusion, and the integration of remote sensing (RS) and geographic information system (GIS)

Hyperspectral Imaging for Fine to Medium Scale Applications in Environmental Sciences

The aim of the Special Issue “Hyperspectral Imaging for Fine to Medium Scale Applications in Environmental Sciences” was to present a selection of innovative studies using hyperspectral imaging (HSI) in different thematic fields. This intention reflects the technical developments in the last three decades, which have brought the capacity of HSI to provide spectrally, spatially and temporally detailed data, favoured by e.g., hyperspectral snapshot technologies, miniaturized hyperspectral sensors and hyperspectral microscopy imaging. The present book comprises a suite of papers in various fields of environmental sciences—geology/mineral exploration, digital soil mapping, mapping and characterization of vegetation, and sensing of water bodies (including under-ice and underwater applications). In addition, there are two rather methodically/technically-oriented contributions dealing with the optimized processing of UAV data and on the design and test of a multi-channel optical receiver for ground-based applications. All in all, this compilation documents that HSI is a multi-faceted research topic and will remain so in the future

Fire models and methods to map fuel types: The role of remote sensing.

Understanding fire is essential to improving forest management strategies. More specifically, an accurate knowledge of the spatial distribution of fuels is critical when analyzing, modelling and predicting fire behaviour. First, we review the main concepts and terminology associated with forest fuels and a number of fuel type classifications. Second, we summarize the main techniques employed to map fuel types starting with the most traditional approaches, such as field work, aerial photo interpretation or ecological modelling. We pay special attention to more contemporary techniques, which involve the use of remote sensing systems. In general, remote sensing systems are low-priced, can be regularly updated and are less time-consuming than traditional methods, but they are still facing important limitations. Recent work has shown that the integration of different sources of information andmethods in a complementary way helps to overcome most of these limitations. Further research is encouraged to develop novel and enhanced remote sensing techniques

Clearing the Clouds: Extracting 3D information from amongst the noise

Advancements permitting the rapid extraction of 3D point clouds from a variety of imaging modalities across the global landscape have provided a vast collection of high fidelity digital surface models. This has created a situation with unprecedented overabundance of 3D observations which greatly outstrips our current capacity to manage and infer actionable information. While years of research have removed some of the manual analysis burden for many tasks, human analysis is still a cornerstone of 3D scene exploitation. This is especially true for complex tasks which necessitate comprehension of scale, texture and contextual learning. In order to ameliorate the interpretation burden and enable scientific discovery from this volume of data, new processing paradigms are necessary to keep pace. With this context, this dissertation advances fundamental and applied research in 3D point cloud data pre-processing and deep learning from a variety of platforms. We show that the representation of 3D point data is often not ideal and sacrifices fidelity, context or scalability. First ground scanning terrestrial LIght Detection And Ranging (LiDAR) models are shown to have an inherent statistical bias, and present a state of the art method for correcting this, while preserving data fidelity and maintaining semantic structure. This technique is assessed in the dense canopy of Micronesia, with our technique being the best at retaining high levels of detail under extreme down-sampling (\u3c 1%). Airborne systems are then explored with a method which is presented to pre-process data to preserve a global contrast and semantic content in deep learners. This approach is validated with a building footprint detection task from airborne imagery captured in Eastern TN from the 3D Elevation Program (3DEP), our approach was found to achieve significant accuracy improvements over traditional techniques. Finally, topography data spanning the globe is used to assess past and previous global land cover change. Utilizing Shuttle Radar Topography Mission (SRTM) and Moderate Resolution Imaging Spectroradiometer (MODIS) data, paired with the airborne preprocessing technique described previously, a model for predicting land-cover change from topography observations is described. The culmination of these efforts have the potential to enhance the capabilities of automated 3D geospatial processing, substantially lightening the burden of analysts, with implications improving our responses to global security, disaster response, climate change, structural design and extraplanetary exploration

Generative feature extraction from sentinel 1 and 2 data for prediction of forest aboveground biomass in the Italian Alps

—Aboveground biomass (AGB) is an important forest attribute directly linked to the forest carbon pool. The use of satellite remote sensing (RS) data has increased for AGB prediction due to their large footprint and low-cost availability. However, they have been limited due to saturation effect that leads to low prediction precision. In this article, we propose an innovative and dynamic architecture based on generative neural network that extracts target oriented generative features for predicting forest AGB using satellite RS data. These features are more resilient to mixed forest types and geographical conditions as compared to the traditional features and models. The effectiveness of the proposed features was assessed by experiments performed using multispectral, synthetic aperture radar, and combined dual-source datasets. The proposed model achieved best performance in terms of precision, model agreement, and overfitting as compared to the other conventional models for all analyzed datasets. The t-distributed stochastic neighbor embedding scatterplots of the generative features clearly show one dimension of the feature space associated with the target AGB. Feature importance analysis indicated that the produced generative features were more significant than the conventional analytical features. Also, the model provided a robust framework for homogeneous fusion of multisensor features from satellite RS data for predicting AG

An overview of monitoring methods for assessing the performance of nature-based solutions against natural hazards

To bring to fruition the capability of nature-based solutions (NBS) in mitigating hydro-meteorological risks (HMRs) and facilitate their widespread uptake require a consolidated knowledge-base related to their monitoring methods, efficiency, functioning and the ecosystem services they provide. We attempt to fill this knowledge gap by reviewing and compiling the existing scientific literature on methods, including ground-based measurements (e.g. gauging stations, wireless sensor network) and remote sensing observations (e.g. from topographic LiDAR, multispectral and radar sensors) that have been used and/or can be relevant to monitor the performance of NBS against five HMRs: floods, droughts, heatwaves, landslides, and storm surges and coastal erosion. These can allow the mapping of the risks and impacts of the specific hydro-meteorological events. We found that the selection and application of monitoring methods mostly rely on the particular NBS being monitored, resource availability (e.g. time, budget, space) and type of HMRs. No standalone method currently exists that can allow monitoring the performance of NBS in its broadest view. However, equipments, tools and technologies developed for other purposes, such as for ground-based measurements and atmospheric observations, can be applied to accurately monitor the performance of NBS to mitigate HMRs. We also focused on the capabilities of passive and active remote sensing, pointing out their associated opportunities and difficulties for NBS monitoring application. We conclude that the advancement in airborne and satellite-based remote sensing technology has signified a leap in the systematic monitoring of NBS performance, as well as provided a robust way for the spatial and temporal comparison of NBS intervention versus its absence. This improved performance measurement can support the evaluation of existing uncertainty and scepticism in selecting NBS over the artificially built concrete structures or grey approaches by addressing the questions of performance precariousness. Remote sensing technical developments, however, take time to shift toward a state of operational readiness for monitoring the progress of NBS in place (e.g. green NBS growth rate, their changes and effectiveness through time). More research is required to develop a holistic approach, which could routinely and continually monitor the performance of NBS over a large scale of intervention. This performance evaluation could increase the ecological and socio-economic benefits of NBS, and also create high levels of their acceptance and confidence by overcoming potential scepticism of NBS implementations