Fish species classification in unconstrained underwater environments based on deep learning

Underwater video and digital still cameras are rapidly being adopted by marine scientists and managers as a tool for non-destructively quantifying and measuring the relative abundance, cover and size of marine fauna and flora. Imagery recorded of fish can be time consuming and costly to process and analyze manually. For this reason, there is great interest in automatic classification, counting, and measurement of fish. Unconstrained underwater scenes are highly variable due to changes in light intensity, changes in fish orientation due to movement, a variety of background habitats which sometimes also move, and most importantly similarity in shape and patterns among fish of different species. This poses a great challenge for image/video processing techniques to accurately differentiate between classes or species of fish to perform automatic classification. We present a machine learning approach, which is suitable for solving this challenge. We demonstrate the use of a convolution neural network model in a hierarchical feature combination setup to learn species-dependent visual features of fish that are unique, yet abstract and robust against environmental and intra-and inter-species variability. This approach avoids the need for explicitly extracting features from raw images of the fish using several fragmented image processing techniques. As a result, we achieve a single and generic trained architecture with favorable performance even for sample images of fish species that have not been used in training. Using the LifeCLEF14 and LifeCLEF15 benchmark fish datasets, we have demonstrated results with a correct classification rate of more than 90%

Fish4Knowledge: Collecting and Analyzing Massive Coral Reef Fish Video Data

This book gives a start-to-finish overview of the whole Fish4Knowledge project, in 18 short chapters, each describing one aspect of the project. The Fish4Knowledge project explored the possibilities of big video data, in this case from undersea video. Recording and analyzing 90 thousand hours of video from ten camera locations, the project gives a 3 year view of fish abundance in several tropical coral reefs off the coast of Taiwan. The research system built a remote recording network, over 100 Tb of storage, supercomputer processing, video target detection and

A Comprehensive Survey of Deep Learning in Remote Sensing: Theories, Tools and Challenges for the Community

In recent years, deep learning (DL), a re-branding of neural networks (NNs), has risen to the top in numerous areas, namely computer vision (CV), speech recognition, natural language processing, etc. Whereas remote sensing (RS) possesses a number of unique challenges, primarily related to sensors and applications, inevitably RS draws from many of the same theories as CV; e.g., statistics, fusion, and machine learning, to name a few. This means that the RS community should be aware of, if not at the leading edge of, of advancements like DL. Herein, we provide the most comprehensive survey of state-of-the-art RS DL research. We also review recent new developments in the DL field that can be used in DL for RS. Namely, we focus on theories, tools and challenges for the RS community. Specifically, we focus on unsolved challenges and opportunities as it relates to (i) inadequate data sets, (ii) human-understandable solutions for modelling physical phenomena, (iii) Big Data, (iv) non-traditional heterogeneous data sources, (v) DL architectures and learning algorithms for spectral, spatial and temporal data, (vi) transfer learning, (vii) an improved theoretical understanding of DL systems, (viii) high barriers to entry, and (ix) training and optimizing the DL.Comment: 64 pages, 411 references. To appear in Journal of Applied Remote Sensin

Unveiling the frontiers of deep learning: innovations shaping diverse domains

Deep learning (DL) enables the development of computer models that are capable of learning, visualizing, optimizing, refining, and predicting data. In recent years, DL has been applied in a range of fields, including audio-visual data processing, agriculture, transportation prediction, natural language, biomedicine, disaster management, bioinformatics, drug design, genomics, face recognition, and ecology. To explore the current state of deep learning, it is necessary to investigate the latest developments and applications of deep learning in these disciplines. However, the literature is lacking in exploring the applications of deep learning in all potential sectors. This paper thus extensively investigates the potential applications of deep learning across all major fields of study as well as the associated benefits and challenges. As evidenced in the literature, DL exhibits accuracy in prediction and analysis, makes it a powerful computational tool, and has the ability to articulate itself and optimize, making it effective in processing data with no prior training. Given its independence from training data, deep learning necessitates massive amounts of data for effective analysis and processing, much like data volume. To handle the challenge of compiling huge amounts of medical, scientific, healthcare, and environmental data for use in deep learning, gated architectures like LSTMs and GRUs can be utilized. For multimodal learning, shared neurons in the neural network for all activities and specialized neurons for particular tasks are necessary.Comment: 64 pages, 3 figures, 3 table

Change detection in combination with spatial models and its effectiveness on underwater scenarios

This thesis proposes a novel change detection approach for underwater scenarios and combines it with different especially developed spatial models, this allows accurate and spatially coherent detection of any moving objects with a static camera in arbitrary environments. To deal with the special problems of underwater imaging pre-segmentations based on the optical flow and other special adaptions were added to the change detection algorithm so that it can better handle typical underwater scenarios like a scene crowded by a whole fish swarm

Crown-of-Thorns Starfish Detection by state-of-the-art YOLOv5

Crown-of-Thorns Starfish outbreaks appeared many decades ago which have threatened the overall health of the coral reefs in Australia’s Great Barrier Reef. This indeed has a direct impact on the reef-associated marine organisms and severely damages the biological diversity and resilience of the habitat structure. Yet, COTS surveillance has been carried out for long but completely by human effort, which is absolutely ineffective and prone to errors. There emerges an urge to apply recent advanced technology to deploy unmanned underwater vehicles for detecting the target object and taking suitable actions accordingly. Existing challenges include but not limited to the scarcity of qualified underwater images as well as superior detection algorithms which is able to satisfy major criteria such as light-weight, high accuracy and speedy detection. There are not many papers in this specific area of research and they can’t fulfill these expectations completely. In this thesis, we propose a deep learning based model to automatically detect the COTS in order to prevent the outbreak and minimize coral mortality in the Reef. As such, we use CSIRO COTS Dataset of underwater images from the Swain Reefs region to train our model. Our goal is to recognize as many starfish as possible while keeping the accuracy high enough to ensure the reliability of the solution. We provide a comprehensive background of the problem, and an intensive literature review in this area of research. In addition, to better align with our task, we use F2 score as the main evaluation metrics in our MS COCO- based evaluation scheme. That is, an average F2 is computed from the results obtained at different IoU thresholds, from 0.3 to 0.8 with a step size of 0.05. In our implementation, we experiment with model architecture selection, online image augmentation, confidence score threshold calibration and hyperparameter tuning to improve the testing performance in the model inference stage. Eventually, we present our novel COTS detector as a promising solution for the stated challenge

Large-scale Content-based Visual Information Retrieval

Rather than restricting search to the use of metadata, content-based information retrieval methods attempt to index, search and browse digital objects by means of signatures or features describing their actual content. Such methods have been intensively studied in the multimedia community to allow managing the massive amount of raw multimedia documents created every day (e.g. video will account to 84% of U.S. internet traffic by 2018). Recent years have consequently witnessed a consistent growth of content-aware and multi-modal search engines deployed on massive multimedia data. Popular multimedia search applications such as Google images, Youtube, Shazam, Tineye or MusicID clearly demonstrated that the first generation of large-scale audio-visual search technologies is now mature enough to be deployed on real-world big data. All these successful applications did greatly benefit from 15 years of research on multimedia analysis and efficient content-based indexing techniques. Yet the maturity reached by the first generation of content-based search engines does not preclude an intensive research activity in the field. There is actually still a lot of hard problems to be solved before we can retrieve any information in images or sounds as easily as we do in text documents. Content-based search methods actually have to reach a finer understanding of the contents as well as a higher semantic level. This requires modeling the raw signals by more and more complex and numerous features, so that the algorithms for analyzing, indexing and searching such features have to evolve accordingly. This thesis describes several of my works related to large-scale content-based information retrieval. The different contributions are presented in a bottom-up fashion reflecting a typical three-tier software architecture of an end-to-end multimedia information retrieval system. The lowest layer is only concerned with managing, indexing and searching large sets of high-dimensional feature vectors, whatever their origin or role in the upper levels (visual or audio features, global or part-based descriptions, low or high semantic level, etc. ). The middle layer rather works at the document level and is in charge of analyzing, indexing and searching collections of documents. It typically extracts and embeds the low-level features, implements the querying mechanisms and post-processes the results returned by the lower layer. The upper layer works at the applicative level and is in charge of providing useful and interactive functionalities to the end-user. It typically implements the front-end of the search application, the crawler and the orchestration of the different indexing and search services

Geographic information extraction from texts

A large volume of unstructured texts, containing valuable geographic information, is available online. This information – provided implicitly or explicitly – is useful not only for scientific studies (e.g., spatial humanities) but also for many practical applications (e.g., geographic information retrieval). Although large progress has been achieved in geographic information extraction from texts, there are still unsolved challenges and issues, ranging from methods, systems, and data, to applications and privacy. Therefore, this workshop will provide a timely opportunity to discuss the recent advances, new ideas, and concepts but also identify research gaps in geographic information extraction