Vaex: Big Data exploration in the era of Gaia

We present a new Python library called vaex, to handle extremely large tabular datasets, such as astronomical catalogues like the Gaia catalogue, N-body simulations or any other regular datasets which can be structured in rows and columns. Fast computations of statistics on regular N-dimensional grids allows analysis and visualization in the order of a billion rows per second. We use streaming algorithms, memory mapped files and a zero memory copy policy to allow exploration of datasets larger than memory, e.g. out-of-core algorithms. Vaex allows arbitrary (mathematical) transformations using normal Python expressions and (a subset of) numpy functions which are lazily evaluated and computed when needed in small chunks, which avoids wasting of RAM. Boolean expressions (which are also lazily evaluated) can be used to explore subsets of the data, which we call selections. Vaex uses a similar DataFrame API as Pandas, a very popular library, which helps migration from Pandas. Visualization is one of the key points of vaex, and is done using binned statistics in 1d (e.g. histogram), in 2d (e.g. 2d histograms with colormapping) and 3d (using volume rendering). Vaex is split in in several packages: vaex-core for the computational part, vaex-viz for visualization mostly based on matplotlib, vaex-jupyter for visualization in the Jupyter notebook/lab based in IPyWidgets, vaex-server for the (optional) client-server communication, vaex-ui for the Qt based interface, vaex-hdf5 for hdf5 based memory mapped storage, vaex-astro for astronomy related selections, transformations and memory mapped (column based) fits storage. Vaex is open source and available under MIT license on github, documentation and other information can be found on the main website: https://vaex.io, https://docs.vaex.io or https://github.com/maartenbreddels/vaexComment: 14 pages, 8 figures, Submitted to A&A, interactive version of Fig 4: https://vaex.io/paper/fig

A Survey on Compiler Autotuning using Machine Learning

Since the mid-1990s, researchers have been trying to use machine-learning based approaches to solve a number of different compiler optimization problems. These techniques primarily enhance the quality of the obtained results and, more importantly, make it feasible to tackle two main compiler optimization problems: optimization selection (choosing which optimizations to apply) and phase-ordering (choosing the order of applying optimizations). The compiler optimization space continues to grow due to the advancement of applications, increasing number of compiler optimizations, and new target architectures. Generic optimization passes in compilers cannot fully leverage newly introduced optimizations and, therefore, cannot keep up with the pace of increasing options. This survey summarizes and classifies the recent advances in using machine learning for the compiler optimization field, particularly on the two major problems of (1) selecting the best optimizations and (2) the phase-ordering of optimizations. The survey highlights the approaches taken so far, the obtained results, the fine-grain classification among different approaches and finally, the influential papers of the field.Comment: version 5.0 (updated on September 2018)- Preprint Version For our Accepted Journal @ ACM CSUR 2018 (42 pages) - This survey will be updated quarterly here (Send me your new published papers to be added in the subsequent version) History: Received November 2016; Revised August 2017; Revised February 2018; Accepted March 2018

Marine Gas hydrate research: Changing views over the past 25 years

During the past quarter century views have changed in marine gas-hydrate research and in its perception by the society at large: (1) Deep-sea drilling has gone from a policy of avoiding gas hydrate to emphasizing deliberate drilling for it. (2) International programs have evolved from exploiting gas hydrates as energy to considering exchange of CO2 for CH4 hydrates as a means of carbon dioxide storage. (3) Lately, due to global change, research has changed from pursuing methane-hydrate reserves to documenting release of methane from destabilization in marginal seas. The first stage generated a wealth of knowledge and laid the foundation for marine gas hydrate research upon which we build today. The second stage is traced to more accurately estimating exploitable hydrate-bound gas and finding recovery technologies, that has lead to the discovery of an innovative option coupling production of methane from CH4-hydrate to storage of CO2 via in the sub-seafloor. Governments worldwide have recognized the potential for carbon dioxide storage and have begun to implement regulations for such environmentally safe carbon capture and storage (CCS). During the third stage, in further exploring global methane hydrate reserves, it has become evident that environmental changes over the past decades may have triggered release of methane from destabilizing hydrate at the seabed as well as diminished oxygen content in the near-bottom of marginal seas. Such scenarios had been proposed for past global warming and now appear to become active again. Exemplary highlights and selected cases studies are documented for each of the evolving stages

Learning-based run-time power and energy management of multi/many-core systems: current and future trends

Multi/Many-core systems are prevalent in several application domains targeting different scales of computing such as embedded and cloud computing. These systems are able to fulfil the everincreasing performance requirements by exploiting their parallel processing capabilities. However, effective power/energy management is required during system operations due to several reasons such as to increase the operational time of battery operated systems, reduce the energy cost of datacenters, and improve thermal efficiency and reliability. This article provides an extensive survey of learning-based run-time power/energy management approaches. The survey includes a taxonomy of the learning-based approaches. These approaches perform design-time and/or run-time power/energy management by employing some learning principles such as reinforcement learning. The survey also highlights the trends followed by the learning-based run-time power management approaches, their upcoming trends and open research challenges

A Model-based Design Framework for Application-specific Heterogeneous Systems

The increasing heterogeneity of computing systems enables higher performance and power efficiency. However, these improvements come at the cost of increasing the overall complexity of designing such systems. These complexities include constructing implementations for various types of processors, setting up and configuring communication protocols, and efficiently scheduling the computational work. The process for developing such systems is iterative and time consuming, with no well-defined performance goal. Current performance estimation approaches use source code implementations that require experienced developers and time to produce. We present a framework to aid in the design of heterogeneous systems and the performance tuning of applications. Our framework supports system construction: integrating custom hardware accelerators with existing cores into processors, integrating processors into cohesive systems, and mapping computations to processors to achieve overall application performance and efficient hardware usage. It also facilitates effective design space exploration using processor models (for both existing and future processors) that do not require source code implementations to estimate performance. We evaluate our framework using a variety of applications and implement them in systems ranging from low power embedded systems-on-chip (SoC) to high performance systems consisting of commercial-off-the-shelf (COTS) components. We show how the design process is improved, reducing the number of design iterations and unnecessary source code development ultimately leading to higher performing efficient systems

Exploring Dynamic Compilation and Cross-Layer Object Management Policies for Managed Language Applications

Recent years have witnessed the widespread adoption of managed programming languages that are designed to execute on virtual machines. Virtual machine architectures provide several powerful software engineering advantages over statically compiled binaries, such as portable program representations, additional safety guarantees, automatic memory and thread management, and dynamic program composition, which have largely driven their success. To support and facilitate the use of these features, virtual machines implement a number of services that adaptively manage and optimize application behavior during execution. Such runtime services often require tradeoffs between efficiency and effectiveness, and different policies can have major implications on the system's performance and energy requirements. In this work, we extensively explore policies for the two runtime services that are most important for achieving performance and energy efficiency: dynamic (or Just-In-Time (JIT)) compilation and memory management. First, we examine the properties of single-tier and multi-tier JIT compilation policies in order to find strategies that realize the best program performance for existing and future machines. Our analysis performs hundreds of experiments with different compiler aggressiveness and optimization levels to evaluate the performance impact of varying if and when methods are compiled. We later investigate the issue of how to optimize program regions to maximize performance in JIT compilation environments. For this study, we conduct a thorough analysis of the behavior of optimization phases in our dynamic compiler, and construct a custom experimental framework to determine the performance limits of phase selection during dynamic compilation. Next, we explore innovative memory management strategies to improve energy efficiency in the memory subsystem. We propose and develop a novel cross-layer approach to memory management that integrates information and analysis in the VM with fine-grained management of memory resources in the operating system. Using custom as well as standard benchmark workloads, we perform detailed evaluation that demonstrates the energy-saving potential of our approach. We implement and evaluate all of our studies using the industry-standard Oracle HotSpot Java Virtual Machine to ensure that our conclusions are supported by widely-used, state-of-the-art runtime technology

Modeling and scheduling heterogeneous multi-core architectures

Om de prestatie van toekomstige processors en processorarchitecturen te evalueren wordt vaak gebruik gemaakt van een simulator die het gedrag en de prestatie van de processor modelleert. De prestatie bepalen van de uitvoering van een computerprogramma op een gegeven processorarchitectuur m.b.v. een simulator duurt echter vele grootteordes langer dan de werkelijke uitvoeringstijd. Dit beperkt in belangrijke mate de hoeveelheid experimenten die gedaan kunnen worden. In dit doctoraatswerk werd het Multi-Program Performance Model (MPPM) ontwikkeld, een innovatief alternatief voor traditionele simulatie, dat het mogelijk maakt om tot 100.000x sneller een processorconfiguratie te evalueren. MPPM laat ons toe om nooit geziene exploraties te doen. Gebruik makend van dit raamwerk hebben we aangetoond dat de taakplanning cruciaal is om heterogene meerkernige processors optimaal te benutten. Vervolgens werd een nieuwe manier voorgesteld om op een schaalbare manier de taakplanning uit te voeren, namelijk Performance Impact Estimation (PIE). Tijdens de uitvoering van een draad op een gegeven processorkern schatten we de prestatie op een ander type kern op basis van eenvoudig op te meten prestatiemetrieken. Zo beschikken we op elk moment over alle nodige informatie om een efficiënte taakplanning te doen. Dit laat ons bovendien toe te optimaliseren voor verschillende criteria zoals uitvoeringstijd, doorvoersnelheid of fairness