Investigation into Indexing XML Data Techniques

The rapid development of XML technology improves the WWW, since the XML data has many advantages and has become a common technology for transferring data cross the internet. Therefore, the objective of this research is to investigate and study the XML indexing techniques in terms of their structures. The main goal of this investigation is to identify the main limitations of these techniques and any other open issues. Furthermore, this research considers most common XML indexing techniques and performs a comparison between them. Subsequently, this work makes an argument to find out these limitations. To conclude, the main problem of all the XML indexing techniques is the trade-off between the size and the efficiency of the indexes. So, all the indexes become large in order to perform well, and none of them is suitable for all users’ requirements. However, each one of these techniques has some advantages in somehow

Reasoning & Querying – State of the Art

Various query languages for Web and Semantic Web data, both for practical use and as an area of research in the scientific community, have emerged in recent years. At the same time, the broad adoption of the internet where keyword search is used in many applications, e.g. search engines, has familiarized casual users with using keyword queries to retrieve information on the internet. Unlike this easy-to-use querying, traditional query languages require knowledge of the language itself as well as of the data to be queried. Keyword-based query languages for XML and RDF bridge the gap between the two, aiming at enabling simple querying of semi-structured data, which is relevant e.g. in the context of the emerging Semantic Web. This article presents an overview of the field of keyword querying for XML and RDF

Data replication and update propagation in XML P2P data management systems

XML P2P data management systems are P2P systems that use XML as the underlying data format shared between peers in the network. These systems aim to bring the benefits of XML and P2P systems to the distributed data management field. However, P2P systems are known for their lack of central control and high degree of autonomy. Peers may leave the network at any time at will, increasing the risk of data loss. Despite this, most research in XML P2P systems focus on novel and efficient XML indexing and retrieval techniques. Mechanisms for ensuring data availability in XML P2P systems has received comparatively little attention. This project attempts to address this issue. We design an XML P2P data management framework to improve data availability. This framework includes mechanisms for wide-spread data replication, replica location and update propagation. It allows XML documents to be broken down into fragments. By doing so, we aim to reduce the cost of replicating data by distributing smaller XML fragments throughout the network rather than entire documents. To tackle the data replication problem, we propose a suite of selection and placement algorithms that may be interchanged to form a particular replication strategy. To support the placement of replicas anywhere in the network, we use a Fragment Location Catalogue, a global index that maintains the locations of replicas. We also propose a lazy update propagation algorithm to propagate updates to replicas. Experiments show that the data replication algorithms improve data availability in our experimental network environment. We also find that breaking XML documents into smaller pieces and replicating those instead of whole XML documents considerably reduces the replication cost, but at the price of some loss in data availability. For the update propagation tests, we find that the probability that queries return up-to-date results increases, but improvements to the algorithm are necessary to handle environments with high update rates

Processing Rank-Aware Queries in Schema-Based P2P Systems

Effiziente Anfragebearbeitung in Datenintegrationssystemen sowie in P2P-Systemen ist bereits seit einigen Jahren ein Aspekt aktueller Forschung. Konventionelle Datenintegrationssysteme bestehen aus mehreren Datenquellen mit ggf. unterschiedlichen Schemata, sind hierarchisch aufgebaut und besitzen eine zentrale Komponente: den Mediator, der ein globales Schema verwaltet. Anfragen an das System werden auf diesem globalen Schema formuliert und vom Mediator bearbeitet, indem relevante Daten von den Datenquellen transparent für den Benutzer angefragt werden. Aufbauend auf diesen Systemen entstanden schließlich Peer-Daten-Management-Systeme (PDMSs) bzw. schemabasierte P2P-Systeme. An einem PDMS teilnehmende Knoten (Peers) können einerseits als Mediatoren agieren andererseits jedoch ebenso als Datenquellen. Darüber hinaus sind diese Peers autonom und können das Netzwerk jederzeit verlassen bzw. betreten. Die potentiell riesige Datenmenge, die in einem derartigen Netzwerk verfügbar ist, führt zudem in der Regel zu sehr großen Anfrageergebnissen, die nur schwer zu bewältigen sind. Daher ist das Bestimmen einer vollständigen Ergebnismenge in vielen Fällen äußerst aufwändig oder sogar unmöglich. In diesen Fällen bietet sich die Anwendung von Top-N- und Skyline-Operatoren, ggf. in Verbindung mit Approximationstechniken, an, da diese Operatoren lediglich diejenigen Datensätze als Ergebnis ausgeben, die aufgrund nutzerdefinierter Ranking-Funktionen am relevantesten für den Benutzer sind. Da durch die Anwendung dieser Operatoren zumeist nur ein kleiner Teil des Ergebnisses tatsächlich dem Benutzer ausgegeben wird, muss nicht zwangsläufig die vollständige Ergebnismenge berechnet werden sondern nur der Teil, der tatsächlich relevant für das Endergebnis ist. Die Frage ist nun, wie man derartige Anfragen durch die Ausnutzung dieser Erkenntnis effizient in PDMSs bearbeiten kann. Die Beantwortung dieser Frage ist das Hauptanliegen dieser Dissertation. Zur Lösung dieser Problemstellung stellen wir effiziente Anfragebearbeitungsstrategien in PDMSs vor, die die charakteristischen Eigenschaften ranking-basierter Operatoren sowie Approximationstechniken ausnutzen. Peers werden dabei sowohl auf Schema- als auch auf Datenebene hinsichtlich der Relevanz ihrer Daten geprüft und dementsprechend in die Anfragebearbeitung einbezogen oder ausgeschlossen. Durch die Heterogenität der Peers werden Techniken zum Umschreiben einer Anfrage von einem Schema in ein anderes nötig. Da existierende Techniken zum Umschreiben von Anfragen zumeist nur konjunktive Anfragen betrachten, stellen wir eine Erweiterung dieser Techniken vor, die Anfragen mit ranking-basierten Anfrageoperatoren berücksichtigt. Da PDMSs dynamische Systeme sind und teilnehmende Peers jederzeit ihre Daten ändern können, betrachten wir in dieser Dissertation nicht nur wie Routing-Indexe verwendet werden, um die Relevanz eines Peers auf Datenebene zu bestimmen, sondern auch wie sie gepflegt werden können. Schließlich stellen wir SmurfPDMS (SiMUlating enviRonment For Peer Data Management Systems) vor, ein System, welches im Rahmen dieser Dissertation entwickelt wurde und alle vorgestellten Techniken implementiert.In recent years, there has been considerable research with respect to query processing in data integration and P2P systems. Conventional data integration systems consist of multiple sources with possibly different schemas, adhere to a hierarchical structure, and have a central component (mediator) that manages a global schema. Queries are formulated against this global schema and the mediator processes them by retrieving relevant data from the sources transparently to the user. Arising from these systems, eventually Peer Data Management Systems (PDMSs), or schema-based P2P systems respectively, have attracted attention. Peers participating in a PDMS can act both as a mediator and as a data source, are autonomous, and might leave or join the network at will. Due to these reasons peers often hold incomplete or erroneous data sets and mappings. The possibly huge amount of data available in such a network often results in large query result sets that are hard to manage. Due to these reasons, retrieving the complete result set is in most cases difficult or even impossible. Applying rank-aware query operators such as top-N and skyline, possibly in conjunction with approximation techniques, is a remedy to these problems as these operators select only those result records that are most relevant to the user. Being aware that in most cases only a small fraction of the complete result set is actually output to the user, retrieving the complete set before evaluating such operators is obviously inefficient. Therefore, the questions we want to answer in this dissertation are how to compute such queries in PDMSs and how to do that efficiently. We propose strategies for efficient query processing in PDMSs that exploit the characteristics of rank-aware queries and optionally apply approximation techniques. A peer's relevance is determined on two levels: on schema-level and on data-level. According to its relevance a peer is either considered for query processing or not. Because of heterogeneity queries need to be rewritten, enabling cooperation between peers that use different schemas. As existing query rewriting techniques mostly consider conjunctive queries only, we present an extension that allows for rewriting queries involving rank-aware query operators. As PDMSs are dynamic systems and peers might update their local data, this dissertation addresses not only the problem of considering such structures within a query processing strategy but also the problem of keeping them up-to-date. Finally, we provide a system-level evaluation by presenting SmurfPDMS (SiMUlating enviRonment For Peer Data Management Systems) -- a system created in the context of this dissertation implementing all presented techniques

I/O efficient bisimulation partitioning on very large directed acyclic graphs

In this paper we introduce the first efficient external-memory algorithm to compute the bisimilarity equivalence classes of a directed acyclic graph (DAG). DAGs are commonly used to model data in a wide variety of practical applications, ranging from XML documents and data provenance models, to web taxonomies and scientific workflows. In the study of efficient reasoning over massive graphs, the notion of node bisimilarity plays a central role. For example, grouping together bisimilar nodes in an XML data set is the first step in many sophisticated approaches to building indexing data structures for efficient XPath query evaluation. To date, however, only internal-memory bisimulation algorithms have been investigated. As the size of real-world DAG data sets often exceeds available main memory, storage in external memory becomes necessary. Hence, there is a practical need for an efficient approach to computing bisimulation in external memory. Our general algorithm has a worst-case IO-complexity of O(Sort(|N| + |E|)), where |N| and |E| are the numbers of nodes and edges, resp., in the data graph and Sort(n) is the number of accesses to external memory needed to sort an input of size n. We also study specializations of this algorithm to common variations of bisimulation for tree-structured XML data sets. We empirically verify efficient performance of the algorithms on graphs and XML documents having billions of nodes and edges, and find that the algorithms can process such graphs efficiently even when very limited internal memory is available. The proposed algorithms are simple enough for practical implementation and use, and open the door for further study of external-memory bisimulation algorithms. To this end, the full open-source C++ implementation has been made freely available

Towards Collaborative Scientific Workflow Management System

The big data explosion phenomenon has impacted several domains, starting from research areas to divergent of business models in recent years. As this intensive amount of data opens up the possibilities of several interesting knowledge discoveries, over the past few years divergent of research domains have undergone the shift of trend towards analyzing those massive amount data. Scientific Workflow Management System (SWfMS) has gained much popularity in recent years in accelerating those data-intensive analyses, visualization, and discoveries of important information. Data-intensive tasks are often significantly time-consuming and complex in nature and hence SWfMSs are designed to efficiently support the specification, modification, execution, failure handling, and monitoring of the tasks in a scientific workflow. As far as the complexity, dimension, and volume of data are concerned, their effective analysis or management often become challenging for an individual and requires collaboration of multiple scientists instead. Hence, the notion of 'Collaborative SWfMS' was coined - which gained significant interest among researchers in recent years as none of the existing SWfMSs directly support real-time collaboration among scientists. In terms of collaborative SWfMSs, consistency management in the face of conflicting concurrent operations of the collaborators is a major challenge for its highly interconnected document structure among the computational modules - where any minor change in a part of the workflow can highly impact the other part of the collaborative workflow for the datalink relation among them. In addition to the consistency management, studies show several other challenges that need to be addressed towards a successful design of collaborative SWfMSs, such as sub-workflow composition and execution by different sub-groups, relationship between scientific workflows and collaboration models, sub-workflow monitoring, seamless integration and access control of the workflow components among collaborators and so on. In this thesis, we propose a locking scheme to facilitate consistency management in collaborative SWfMSs. The proposed method works by locking workflow components at a granular attribute level in addition to supporting locks on a targeted part of the collaborative workflow. We conducted several experiments to analyze the performance of the proposed method in comparison to related existing methods. Our studies show that the proposed method can reduce the average waiting time of a collaborator by up to 36% while increasing the average workflow update rate by up to 15% in comparison to existing descendent modular level locking techniques for collaborative SWfMSs. We also propose a role-based access control technique for the management of collaborative SWfMSs. We leverage the Collaborative Interactive Application Methodology (CIAM) for the investigation of role-based access control in the context of collaborative SWfMSs. We present our proposed method with a use-case of Plant Phenotyping and Genotyping research domain. Recent study shows that the collaborative SWfMSs often different sets of opportunities and challenges. From our investigations on existing research works towards collaborative SWfMSs and findings of our prior two studies, we propose an architecture of collaborative SWfMSs. We propose - SciWorCS - a Collaborative Scientific Workflow Management System as a proof of concept of the proposed architecture; which is the first of its kind to the best of our knowledge. We present several real-world use-cases of scientific workflows using SciWorCS. Finally, we conduct several user studies using SciWorCS comprising different real-world scientific workflows (i.e., from myExperiment) to understand the user behavior and styles of work in the context of collaborative SWfMSs. In addition to evaluating SciWorCS, the user studies reveal several interesting facts which can significantly contribute in the research domain, as none of the existing methods considered such empirical studies, and rather relied only on computer generated simulated studies for evaluation