Accelerating Generalized Linear Models with MLWeaving: A One-Size-Fits-All System for Any-precision Learning (Technical Report)

Learning from the data stored in a database is an important function increasingly available in relational engines. Methods using lower precision input data are of special interest given their overall higher efficiency but, in databases, these methods have a hidden cost: the quantization of the real value into a smaller number is an expensive step. To address the issue, in this paper we present MLWeaving, a data structure and hardware acceleration technique intended to speed up learning of generalized linear models in databases. ML-Weaving provides a compact, in-memory representation enabling the retrieval of data at any level of precision. MLWeaving also takes advantage of the increasing availability of FPGA-based accelerators to provide a highly efficient implementation of stochastic gradient descent. The solution adopted in MLWeaving is more efficient than existing designs in terms of space (since it can process any resolution on the same design) and resources (via the use of bit-serial multipliers). MLWeaving also enables the runtime tuning of precision, instead of a fixed precision level during the training. We illustrate this using a simple, dynamic precision schedule. Experimental results show MLWeaving achieves up to16 performance improvement over low-precision CPU implementations of first-order methods.Comment: 18 page

Parallelization of dynamic programming recurrences in computational biology

The rapid growth of biosequence databases over the last decade has led to a performance bottleneck in the applications analyzing them. In particular, over the last five years DNA sequencing capacity of next-generation sequencers has been doubling every six months as costs have plummeted. The data produced by these sequencers is overwhelming traditional compute systems. We believe that in the future compute performance, not sequencing, will become the bottleneck in advancing genome science. In this work, we investigate novel computing platforms to accelerate dynamic programming algorithms, which are popular in bioinformatics workloads. We study algorithm-specific hardware architectures that exploit fine-grained parallelism in dynamic programming kernels using field-programmable gate arrays: FPGAs). We advocate a high-level synthesis approach, using the recurrence equation abstraction to represent dynamic programming and polyhedral analysis to exploit parallelism. We suggest a novel technique within the polyhedral model to optimize for throughput by pipelining independent computations on an array. This design technique improves on the state of the art, which builds latency-optimal arrays. We also suggest a method to dynamically switch between a family of designs using FPGA reconfiguration to achieve a significant performance boost. We have used polyhedral methods to parallelize the Nussinov RNA folding algorithm to build a family of accelerators that can trade resources for parallelism and are between 15-130x faster than a modern dual core CPU implementation. A Zuker RNA folding accelerator we built on a single workstation with four Xilinx Virtex 4 FPGAs outperforms 198 3 GHz Intel Core 2 Duo processors. Furthermore, our design running on a single FPGA is an order of magnitude faster than competing implementations on similar-generation FPGAs and graphics processors. Our work is a step toward the goal of automated synthesis of hardware accelerators for dynamic programming algorithms

Accelerating Pattern Recognition Algorithms On Parallel Computing Architectures

The move to more parallel computing architectures places more responsibility on the programmer to achieve greater performance. The programmer must now have a greater understanding of the underlying architecture and the inherent algorithmic parallelism. Using parallel computing architectures for exploiting algorithmic parallelism can be a complex task. This dissertation demonstrates various techniques for using parallel computing architectures to exploit algorithmic parallelism. Specifically, three pattern recognition (PR) approaches are examined for acceleration across multiple parallel computing architectures, namely field programmable gate arrays (FPGAs) and general purpose graphical processing units (GPGPUs). Phase-only filter correlation for fingerprint identification was studied as the first PR approach. This approach\u27s sensitivity to angular rotations, scaling, and missing data was surveyed. Additionally, a novel FPGA implementation of this algorithm was created using fixed point computations, deep pipelining, and four computation phases. Communication and computation were overlapped to efficiently process large fingerprint galleries. The FPGA implementation showed approximately a 47 times speedup over a central processing unit (CPU) implementation with negligible impact on precision. For the second PR approach, a spiking neural network (SNN) algorithm for a character recognition application was examined. A novel FPGA implementation of the approach was developed incorporating a scalable modular SNN processing element (PE) to efficiently perform neural computations. The modular SNN PE incorporated streaming memory, fixed point computation, and deep pipelining. This design showed speedups of approximately 3.3 and 8.5 times over CPU implementations for 624 and 9,264 sized neural networks, respectively. Results indicate that the PE design could scale to process larger sized networks easily. Finally for the third PR approach, cellular simultaneous recurrent networks (CSRNs) were investigated for GPGPU acceleration. Particularly, the applications of maze traversal and face recognition were studied. Novel GPGPU implementations were developed employing varying quantities of task-level, data-level, and instruction-level parallelism to achieve efficient runtime performance. Furthermore, the performance of the face recognition application was examined across a heterogeneous cluster of multi-core and GPGPU architectures. A combination of multi-core processors and GPGPUs achieved roughly a 996 times speedup over a single-core CPU implementation. From examining these PR approaches for acceleration, this dissertation presents useful techniques and insight applicable to other algorithms to improve performance when designing a parallel implementation

Energy-Efficient Recurrent Neural Network Accelerators for Real-Time Inference

Over the past decade, Deep Learning (DL) and Deep Neural Network (DNN) have gone through a rapid development. They are now vastly applied to various applications and have profoundly changed the life of hu- man beings. As an essential element of DNN, Recurrent Neural Networks (RNN) are helpful in processing time-sequential data and are widely used in applications such as speech recognition and machine translation. RNNs are difficult to compute because of their massive arithmetic operations and large memory footprint. RNN inference workloads used to be executed on conventional general-purpose processors including Central Processing Units (CPU) and Graphics Processing Units (GPU); however, they have un- necessary hardware blocks for RNN computation such as branch predictor, caching system, making them not optimal for RNN processing. To accelerate RNN computations and outperform the performance of conventional processors, previous work focused on optimization methods on both software and hardware. On the software side, previous works mainly used model compression to reduce the memory footprint and the arithmetic operations of RNNs. On the hardware side, previous works also designed domain-specific hardware accelerators based on Field Pro- grammable Gate Arrays (FPGA) or Application Specific Integrated Circuits (ASIC) with customized hardware pipelines optimized for efficient pro- cessing of RNNs. By following this software-hardware co-design strategy, previous works achieved at least 10X speedup over conventional processors. Many previous works focused on achieving high throughput with a large batch of input streams. However, in real-time applications, such as gaming Artificial Intellegence (AI), dynamical system control, low latency is more critical. Moreover, there is a trend of offloading neural network workloads to edge devices to provide a better user experience and privacy protection. Edge devices, such as mobile phones and wearable devices, are usually resource-constrained with a tight power budget. They require RNN hard- ware that is more energy-efficient to realize both low-latency inference and long battery life. Brain neurons have sparsity in both the spatial domain and time domain. Inspired by this human nature, previous work mainly explored model compression to induce spatial sparsity in RNNs. The delta network algorithm alternatively induces temporal sparsity in RNNs and can save over 10X arithmetic operations in RNNs proven by previous works. In this work, we have proposed customized hardware accelerators to exploit temporal sparsity in Gated Recurrent Unit (GRU)-RNNs and Long Short-Term Memory (LSTM)-RNNs to achieve energy-efficient real-time RNN inference. First, we have proposed DeltaRNN, the first-ever RNN accelerator to exploit temporal sparsity in GRU-RNNs. DeltaRNN has achieved 1.2 TOp/s effective throughput with a batch size of 1, which is 15X higher than its related works. Second, we have designed EdgeDRNN to accelerate GRU-RNN edge inference. Compared to DeltaRNN, EdgeDRNN does not rely on on-chip memory to store RNN weights and focuses on reducing off-chip Dynamic Random Access Memory (DRAM) data traffic using a more scalable architecture. EdgeDRNN have realized real-time inference of large GRU-RNNs with submillisecond latency and only 2.3 W wall plug power consumption, achieving 4X higher energy efficiency than commercial edge AI platforms like NVIDIA Jetson Nano. Third, we have used DeltaRNN to realize the first-ever continuous speech recognition sys- tem with the Dynamic Audio Sensor (DAS) as the front-end. The DAS is a neuromorphic event-driven sensor that produces a stream of asyn- chronous events instead of audio data sampled at a fixed sample rate. We have also showcased how an RNN accelerator can be integrated with an event-driven sensor on the same chip to realize ultra-low-power Keyword Spotting (KWS) on the extreme edge. Fourth, we have used EdgeDRNN to control a powered robotic prosthesis using an RNN controller to replace a conventional proportional–derivative (PD) controller. EdgeDRNN has achieved 21 μs latency of running the RNN controller and could maintain stable control of the prosthesis. We have used DeltaRNN and EdgeDRNN to solve these problems to prove their value in solving real-world problems. Finally, we have applied the delta network algorithm on LSTM-RNNs and have combined it with a customized structured pruning method, called Column-Balanced Targeted Dropout (CBTD), to induce spatio-temporal sparsity in LSTM-RNNs. Then, we have proposed another FPGA-based accelerator called Spartus, the first RNN accelerator that exploits spatio- temporal sparsity. Spartus achieved 9.4 TOp/s effective throughput with a batch size of 1, the highest among present FPGA-based RNN accelerators with a power budget around 10 W. Spartus can complete the inference of an LSTM layer having 5 million parameters within 1 μs