13,693 research outputs found
Fast and Deterministic Approximations for k-Cut
In an undirected graph, a k-cut is a set of edges whose removal breaks the graph into at least k connected components. The minimum weight k-cut can be computed in n^O(k) time, but when k is treated as part of the input, computing the minimum weight k-cut is NP-Hard [Goldschmidt and Hochbaum, 1994]. For poly(m,n,k)-time algorithms, the best possible approximation factor is essentially 2 under the small set expansion hypothesis [Manurangsi, 2017]. Saran and Vazirani [1995] showed that a (2 - 2/k)-approximately minimum weight k-cut can be computed via O(k) minimum cuts, which implies a O~(km) randomized running time via the nearly linear time randomized min-cut algorithm of Karger [2000]. Nagamochi and Kamidoi [2007] showed that a (2 - 2/k)-approximately minimum weight k-cut can be computed deterministically in O(mn + n^2 log n) time. These results prompt two basic questions. The first concerns the role of randomization. Is there a deterministic algorithm for 2-approximate k-cuts matching the randomized running time of O~(km)? The second question qualitatively compares minimum cut to 2-approximate minimum k-cut. Can 2-approximate k-cuts be computed as fast as the minimum cut - in O~(m) randomized time?
We give a deterministic approximation algorithm that computes (2 + eps)-minimum k-cuts in O(m log^3 n / eps^2) time, via a (1 + eps)-approximation for an LP relaxation of k-cut
Vertex Sparsifiers: New Results from Old Techniques
Given a capacitated graph and a set of terminals ,
how should we produce a graph only on the terminals so that every
(multicommodity) flow between the terminals in could be supported in
with low congestion, and vice versa? (Such a graph is called a
flow-sparsifier for .) What if we want to be a "simple" graph? What if
we allow to be a convex combination of simple graphs?
Improving on results of Moitra [FOCS 2009] and Leighton and Moitra [STOC
2010], we give efficient algorithms for constructing: (a) a flow-sparsifier
that maintains congestion up to a factor of , where , (b) a convex combination of trees over the terminals that maintains
congestion up to a factor of , and (c) for a planar graph , a
convex combination of planar graphs that maintains congestion up to a constant
factor. This requires us to give a new algorithm for the 0-extension problem,
the first one in which the preimages of each terminal are connected in .
Moreover, this result extends to minor-closed families of graphs.
Our improved bounds immediately imply improved approximation guarantees for
several terminal-based cut and ordering problems.Comment: An extended abstract appears in the 13th International Workshop on
Approximation Algorithms for Combinatorial Optimization Problems (APPROX),
2010. Final version to appear in SIAM J. Computin
The Minimum Wiener Connector
The Wiener index of a graph is the sum of all pairwise shortest-path
distances between its vertices. In this paper we study the novel problem of
finding a minimum Wiener connector: given a connected graph and a set
of query vertices, find a subgraph of that connects all
query vertices and has minimum Wiener index.
We show that The Minimum Wiener Connector admits a polynomial-time (albeit
impractical) exact algorithm for the special case where the number of query
vertices is bounded. We show that in general the problem is NP-hard, and has no
PTAS unless . Our main contribution is a
constant-factor approximation algorithm running in time
.
A thorough experimentation on a large variety of real-world graphs confirms
that our method returns smaller and denser solutions than other methods, and
does so by adding to the query set a small number of important vertices
(i.e., vertices with high centrality).Comment: Published in Proceedings of the 2015 ACM SIGMOD International
Conference on Management of Dat
Connecting Seed Lists of Mammalian Proteins Using Steiner Trees
Multivariate experiments and genomics studies applied to mammalian cells often produce lists of genes or proteins altered under treatment/disease vs. control/normal conditions. Such lists can be identified in known protein-protein interaction networks to produce subnetworks that “connect” the genes or proteins from the lists. Such subnetworks are valuable for biologists since they can suggest regulatory mechanisms that are altered under different conditions. Often such subnetworks are overloaded with links and nodes resulting in connectivity diagrams that are illegible due to edge overlap. In this study, we attempt to address this problem by implementing an approximation to the Steiner Tree problem to connect seed lists of mammalian proteins/genes using literature-based protein-protein interaction networks. To avoid over-representation of hubs in the resultant Steiner Trees we assign a cost to Steiner Vertices based on their connectivity degree. We applied the algorithm to lists of genes commonly mutated in colorectal cancer to demonstrate the usefulness of this approach
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