Network Sampling: From Static to Streaming Graphs

Network sampling is integral to the analysis of social, information, and biological networks. Since many real-world networks are massive in size, continuously evolving, and/or distributed in nature, the network structure is often sampled in order to facilitate study. For these reasons, a more thorough and complete understanding of network sampling is critical to support the field of network science. In this paper, we outline a framework for the general problem of network sampling, by highlighting the different objectives, population and units of interest, and classes of network sampling methods. In addition, we propose a spectrum of computational models for network sampling methods, ranging from the traditionally studied model based on the assumption of a static domain to a more challenging model that is appropriate for streaming domains. We design a family of sampling methods based on the concept of graph induction that generalize across the full spectrum of computational models (from static to streaming) while efficiently preserving many of the topological properties of the input graphs. Furthermore, we demonstrate how traditional static sampling algorithms can be modified for graph streams for each of the three main classes of sampling methods: node, edge, and topology-based sampling. Our experimental results indicate that our proposed family of sampling methods more accurately preserves the underlying properties of the graph for both static and streaming graphs. Finally, we study the impact of network sampling algorithms on the parameter estimation and performance evaluation of relational classification algorithms

2.5K-Graphs: from Sampling to Generation

Understanding network structure and having access to realistic graphs plays a central role in computer and social networks research. In this paper, we propose a complete, and practical methodology for generating graphs that resemble a real graph of interest. The metrics of the original topology we target to match are the joint degree distribution (JDD) and the degree-dependent average clustering coefficient ($\bar{c}(k)$). We start by developing efficient estimators for these two metrics based on a node sample collected via either independence sampling or random walks. Then, we process the output of the estimators to ensure that the target properties are realizable. Finally, we propose an efficient algorithm for generating topologies that have the exact target JDD and a $\bar{c}(k)$ close to the target. Extensive simulations using real-life graphs show that the graphs generated by our methodology are similar to the original graph with respect to, not only the two target metrics, but also a wide range of other topological metrics; furthermore, our generator is order of magnitudes faster than state-of-the-art techniques

Detecting Communities under Differential Privacy

Complex networks usually expose community structure with groups of nodes sharing many links with the other nodes in the same group and relatively few with the nodes of the rest. This feature captures valuable information about the organization and even the evolution of the network. Over the last decade, a great number of algorithms for community detection have been proposed to deal with the increasingly complex networks. However, the problem of doing this in a private manner is rarely considered. In this paper, we solve this problem under differential privacy, a prominent privacy concept for releasing private data. We analyze the major challenges behind the problem and propose several schemes to tackle them from two perspectives: input perturbation and algorithm perturbation. We choose Louvain method as the back-end community detection for input perturbation schemes and propose the method LouvainDP which runs Louvain algorithm on a noisy super-graph. For algorithm perturbation, we design ModDivisive using exponential mechanism with the modularity as the score. We have thoroughly evaluated our techniques on real graphs of different sizes and verified their outperformance over the state-of-the-art

Edge-weighting of gene expression graphs

In recent years, considerable research efforts have been directed to micro-array technologies and their role in providing simultaneous information on expression profiles for thousands of genes. These data, when subjected to clustering and classification procedures, can assist in identifying patterns and providing insight on biological processes. To understand the properties of complex gene expression datasets, graphical representations can be used. Intuitively, the data can be represented in terms of a bipartite graph, with weighted edges corresponding to gene-sample node couples in the dataset. Biologically meaningful subgraphs can be sought, but performance can be influenced both by the search algorithm, and, by the graph-weighting scheme and both merit rigorous investigation. In this paper, we focus on edge-weighting schemes for bipartite graphical representation of gene expression. Two novel methods are presented: the first is based on empirical evidence; the second on a geometric distribution. The schemes are compared for several real datasets, assessing efficiency of performance based on four essential properties: robustness to noise and missing values, discrimination, parameter influence on scheme efficiency and reusability. Recommendations and limitations are briefly discussed