Remote sensing of mangrove composition and structure in the Galapagos Islands

Mangroves are unique inter-tidal ecosystems that provide valuable ecosystem goods and services. This dissertation investigates new methods of characterizing mangrove forests using remote sensing with implications for mapping and modeling ecosystem goods and services. Specifically, species composition, leaf area, and canopy height are investigated for mangroves in the Galapagos Islands. The Galapagos Islands serve as an interesting case study where environmental conditions are highly variable over short distances producing a wide range of mangrove composition and structure to examine. This dissertation reviews previous mangrove remote sensing studies and seeks to address missing gaps. Specifically, this research seeks to examine pixel and object-based methods for mapping mangrove species, investigate the usefulness of spectral and spatial metrics to estimate leaf area, and compare existing global digital surface models with a digital surface model extracted from new very high resolution imagery. The major findings of this research include the following: 1) greater spectral separability between true mangrove and mangrove associate species using object-based image analysis compared to pixel-based analysis, but a lack of separability between individual mangrove species, 2) the demonstrated necessity for novel machine-learning classification techniques rather than traditional clustering classification algorithms, 3) significant but weak relationships between spectral vegetation indices and leaf area, 4) moderate to strong relationships between grey-level co-occurrence matrix image texture and leaf area at the individual species level, 5) similar accuracy between a very high resolution stereo optical digital surface model a coarse resolution InSAR product to estimate canopy height with improved accuracy using a hybrid model of these two products. The results demonstrate advancements in remote sensing technology and technique, but further challenges remain before these methods can be applied to monitoring and modeling applications. Based on these results, future research should focus on emerging technologies such as hyperspectral, very high resolution InSAR, and LiDAR to characterize mangrove forest composition and structure

An Object-Based Classification of Mangroves Using a Hybrid Decision Tree—Support Vector Machine Approach

Mangroves provide valuable ecosystem goods and services such as carbon sequestration, habitat for terrestrial and marine fauna, and coastal hazard mitigation. The use of satellite remote sensing to map mangroves has become widespread as it can provide accurate, efficient, and repeatable assessments. Traditional remote sensing approaches have failed to accurately map fringe mangroves and true mangrove species due to relatively coarse spatial resolution and/or spectral confusion with landward vegetation. This study demonstrates the use of the new Worldview-2 sensor, Object-based image analysis (OBIA), and support vector machine (SVM) classification to overcome both of these limitations. An exploratory spectral separability showed that individual mangrove species could not be spectrally separated, but a distinction between true and associate mangrove species could be made. An OBIA classification was used that combined a decision-tree classification with the machine-learning SVM classification. Results showed an overall accuracy greater than 94% (kappa = 0.863) for classifying true mangroves species and other dense coastal vegetation at the object level. There remain serious challenges to accurately mapping fringe mangroves using remote sensing data due to spectral similarity of mangrove and associate species, lack of clear zonation between species, and mixed pixel effects, especially when vegetation is sparse or degraded

Mapping vegetation with remote sensing and GIS data using object-based analysis and machine learning algorithms

Remote sensing technology is an efficient tool for various practical applications of environmental resources management. Advances in this technology include the diverse range of high quality data sources and image analysis techniques. Object-based image analysis (OBIA) and machine learning algorithms are recent advances, which this thesis evaluates. OBIA and machine learning algorithms are first tested using a combination of multiple datasets for identifying individual tree species. These datasets include Quickbird, LiDAR, and GIS derived terrain data. Improvements in tree species classification were obtained and the best data combination was terrain context (based on slope, elevation, and wetness), tree height, canopy shape, and branch density (based on LiDAR return intensity). The availability of a range of classifiers and different data pre-processing techniques adds to the complexity of image analysis. The combinations of these techniques result in a large number of potential outcomes and these need to be evaluated. Therefore, the second part of this research investigated and compared tree species classification performance for different methods (Naïve Bayes - NB , Logistic Regression - LR, Random Forest - RF, and Support Vector Machine - SVM), combined with various dimensionality reduction (DR) methods (Correlation-based feature selection filter, Information Gain, Wrapper methods, and Principal Component Analysis). When DR was used prior to classification, only the NB classifier had a significant improvement in accuracy. SVM and RF had the best classification accuracy, and this was achieved without DR. The final part of this thesis demonstrates a new method using OBIA for mapping the biomass change of mangrove forests in Vietnam between 2000 and 2011 from SPOT images. First, three different mangrove associations were identified using two levels of image segmentation followed by a SVM classifier and a range of spectral, texture and GIS information for classification. The RF regression model that integrated spectral, vegetation association type, texture, and vegetation indices obtained the highest accuracy

Remotely sensed imagery data application in mangrove forest: a review

The mangrove forest ecosystem acts as a shield against the destructive tidal waves, preventing the coastal areas and other properties nearby from severe damages; this protective function certainly deserves attention from researchers to undertake further investigation and exploration. Mangrove forest provides different goods and services. The unique environmental factors affecting the growth of mangrove forest are as follows: distance from the sea or the estuary bank, frequency and duration of tidal inundation, salinity, and composition of the soil. These crucial factors may under certain circumstances turn into obstacles in accessing and managing the mangrove forest. One effective method to circumvent this shortcoming is by using remotely sensed imagery data, which offers a more accurate way of measuring the ecosystem and a more efficient tool of managing the mangrove forest. This paper attempts to review and discuss the usage of remotely sensed imagery data in mangrove forest management, and how they will improve the accuracy and precision in measuring the mangrove forest ecosystem. All types of measurements related to the mangrove forest ecosystem, such as detection of land cover changes, species distribution mapping and disaster observation should take advantage of the advanced technology; for example, adopting the digital image processing algorithm coupled with high-resolution image available nowadays. Thus, remote sensing is a highly efficient, low-cost and time-saving technique for mangrove forest measurement. The application of this technique will further add value to the mangrove forest and enhance its in-situ conservation and protection programmes in combating the effects of the rising sea level due to climate change

Generalized differential morphological profiles for remote sensing image classification

Differential morphological profiles (DMPs) are widely used for the spatial/structural feature extraction and classification of remote sensing images. They can be regarded as the shape spectrum, depicting the response of the image structures related to different scales and sizes of the structural elements (SEs). DMPs are defined as the difference of morphological profiles (MPs) between consecutive scales. However, traditional DMPs can ignore discriminative information for features that are across the scales in the profiles. To solve this problem, we propose scale-span differential profiles, i.e., generalized DMPs (GDMPs), to obtain the entire differential profiles. GDMPs can describe the complete shape spectrum and measure the difference between arbitrary scales, which is more appropriate for representing the multiscale characteristics and complex landscapes of remote sensing image scenes. Subsequently, the random forest (RF) classifier is applied to interpret GDMPs considering its robustness for high-dimensional data and ability of evaluating the importance of variables. Meanwhile, the RF "out-of-bag" error can be used to quantify the importance of each channel of GDMPs and select the most discriminative information in the entire profiles. Experiments conducted on three well-known hyperspectral data sets as well as an additional World View-2 data are used to validate the effectiveness of GDMPs compared to the traditional DMPs. The results are promising as GDMPs can significantly outperform the traditional one, as it is capable of adequately exploring the multiscale morphological information

High spatial resolution and hyperspectral remote sensing for mapping vegetation species in tropical rainforest

The focus of this study is on vegetation species mapping using high spatial resolution IKONOS-2 and digital Color Infrared (CIR) Aerial Photos (spatial resolution 4 m for IKONOS-2 and 20 cm for CIR) and Hyperion Hyperspectral data (spectral resolution 10 nm) in Pasoh Forest Reserve, Negeri Sembilan. Spatial and spectral separability in distinguishing vegetation species were investigated prior to vegetation species mapping to provide optimal vegetation species discrimination. A total of 88 selected vegetation species and common timber groups of the dominant family Dipterocarpaceae with diameter at breast height more than 30 cm were used in this study, where trees spectra were collected by both in situ and laboratory measurements of foliar samples. The trees spectra were analysed using first and second order derivative analysis together with scatter matrix plot based on multiobjective optimization algorithm to identify the best separability and sensitive wavelength portions for vegetation species mapping. In high spatial resolution data mapping, both IKONOS-2 and CIR data were classified by supervised classification approach using maximum likelihood and neural network classifiers, while the Hyperion data was classified by spectral angle mapper and linear mixture modeling. Results of this study indicate that only a total of ten common timber group of dominant Dipterocarpaceae genus were able to be recognized at significant divergence. Both high spatial resolution data (IKONOS-2 and CIR) gave very good classification accuracy of more than 83%. The classified hyperspectral data at 30 m spatial resolution gave a classification accuracy of 65%, hence confirming that spatial resolution is more sensitive in identification of tree genus. However, for species mapping, both high spatial and spectral remotely sensed data used are marginally less sensitive than at genus level

Remote sensing for biodiversity monitoring: a review of methods for biodiversity indicator extraction and assessment of progress towards international targets

Recognizing the imperative need for biodiversity protection, the Convention on Biological Diversity (CBD) has recently established new targets towards 2020, the so-called Aichi targets, and updated proposed sets of indicators to quantitatively monitor the progress towards these targets. Remote sensing has been increasingly contributing to timely, accurate, and cost-effective assessment of biodiversity-related characteristics and functions during the last years. However, most relevant studies constitute individual research efforts, rarely related with the extraction of widely adopted CBD biodiversity indicators. Furthermore, systematic operational use of remote sensing data by managing authorities has still been limited. In this study, the Aichi targets and the related CBD indicators whose monitoring can be facilitated by remote sensing are identified. For each headline indicator a number of recent remote sensing approaches able for the extraction of related properties are reviewed. Methods cover a wide range of fields, including: habitat extent and condition monitoring; species distribution; pressures from unsustainable management, pollution and climate change; ecosystem service monitoring; and conservation status assessment of protected areas. The advantages and limitations of different remote sensing data and algorithms are discussed. Sorting of the methods based on their reported accuracies is attempted, when possible. The extensive literature survey aims at reviewing highly performing methods that can be used for large-area, effective, and timely biodiversity assessment, to encourage the more systematic use of remote sensing solutions in monitoring progress towards the Aichi targets, and to decrease the gaps between the remote sensing and management communities

Mapping urban tree species in a tropical environment using airborne multispectral and LiDAR data

Dissertation submitted in partial fulfilment of the requirements for the Degree of Master of Science in Geospatial TechnologiesAccurate and up-to-date urban tree inventory is an essential resource for the development of strategies towards sustainable urban planning, as well as for effective management and preservation of biodiversity. Trees contribute to thermal comfort within urban centers by lessening heat island effect and have a direct impact in the reduction of air pollution. However, mapping individual trees species normally involves time-consuming field work over large areas or image interpretation performed by specialists. The integration of airborne LiDAR data with high-spatial resolution and multispectral aerial image is an alternative and effective approach to differentiate tree species at the individual crown level. This thesis aims to investigate the potential of such remotely sensed data to discriminate 5 common urban tree species using traditional Machine Learning classifiers (Random Forest, Support Vector Machine, and k-Nearest Neighbors) in the tropical environment of Salvador, Brazil. Vegetation indices and texture information were extracted from multispectral imagery, and LiDAR-derived variables for tree crowns, were tested separately and combined to perform tree species classification applying three different classifiers. Random Forest outperformed the other two classifiers, reaching overall accuracy of 82.5% when using combined multispectral and LiDAR data. The results indicate that (1) given the similarity in spectral signature, multispectral data alone is not sufficient to distinguish tropical tree species (only k-NN classifier could detect all species); (2) height values and intensity of crown returns points were the most relevant LiDAR features, combination of both datasets improved accuracy up to 20%; (3) generation of canopy height model derived from LiDAR point cloud is an effective method to delineate individual tree crowns in a semi-automatic approach

Remote sensing methods for biodiversity monitoring with emphasis on vegetation height estimation and habitat classification

Biodiversity is a principal factor for ecosystem stability and functioning, and the need for its protection has been identified as imperative globally. Remote sensing can contribute to timely and accurate monitoring of various elements related to biodiversity, but knowledge gap with user communities hinders its widespread operational use. This study advances biodiversity monitoring through earth observation data by initially identifying, reviewing, and proposing state-of-the-art remote sensing methods which can be used for the extraction of a number of widely adopted indicators of global biodiversity assessment. Then, a cost and resource effective approach is proposed for vegetation height estimation, using satellite imagery from very high resolution passive sensors. A number of texture features are extracted, based on local variance, entropy, and local binary patterns, and processed through several data processing, dimensionality reduction, and classification techniques. The approach manages to discriminate six vegetation height categories, useful for ecological studies, with accuracies over 90%. Thus, it offers an effective approach for landscape analysis, and habitat and land use monitoring, extending previous approaches as far as the range of height and vegetation species, synergies of multi-date imagery, data processing, and resource economy are regarded. Finally, two approaches are introduced to advance the state of the art in habitat classification using remote sensing data and pre-existing land cover information. The first proposes a methodology to express land cover information as numerical features and a supervised classification framework, automating the previous labour- and time-consuming rule-based approach used as reference. The second advances the state of the art incorporating Dempster–Shafer evidential theory and fuzzy sets, and proves successful in handling uncertainties from missing data or vague rules and offering wide user defined parameterization potential. Both approaches outperform the reference study in classification accuracy, proving promising for biodiversity monitoring, ecosystem preservation, and sustainability management tasks.Open Acces