Ontology selection: ontology evaluation on the real Semantic Web

The increasing number of ontologies on the Web and the appearance of large scale ontology repositories has brought the topic of ontology selection in the focus of the semantic web research agenda. Our view is that ontology evaluation is core to ontology selection and that, because ontology selection is performed in an open Web environment, it brings new challenges to ontology evaluation. Unfortunately, current research regards ontology selection and evaluation as two separate topics. Our goal in this paper is to explore how these two tasks relate. In particular, we are interested to get a better understanding of the ontology selection task and filter out the challenges that it brings to ontology evaluation. We discuss requirements posed by the open Web environment on ontology selection, we overview existing work on selection and point out future directions. Our major conclusion is that, even if selection methods still need further development, they have already brought novel approaches to ontology evaluatio

Ontology summarization: an analysis and an evaluation

Ontology summarization has been recognized as a very useful technique to facilitate ontology understanding and then support ontology reuse as a new or supplementing technique. A number of efforts have emerged lately that apply different criteria, addressing different features of ontology, to extract ontology summaries. However, those efforts are ad-hoc in that there lacks consensus on a number of issues fundamental to the development of the field, such as a definition for ontology summarization, use case scenarios etc. Also, there lack sufficient evaluations and analysis, e.g. comparison among them and with other similar techniques, to provide meaning guidelines for users of this technique. With the aim to provide solutions to those fundamental issues, in this work, we present an analysis of this technique and its approaches. With the help of an objective evaluation method, we investigate what features of ontology are important in ontology summarization

The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases.

Model organisms are essential experimental platforms for discovering gene functions, defining protein and genetic networks, uncovering functional consequences of human genome variation, and for modeling human disease. For decades, researchers who use model organisms have relied on Model Organism Databases (MODs) and the Gene Ontology Consortium (GOC) for expertly curated annotations, and for access to integrated genomic and biological information obtained from the scientific literature and public data archives. Through the development and enforcement of data and semantic standards, these genome resources provide rapid access to the collected knowledge of model organisms in human readable and computation-ready formats that would otherwise require countless hours for individual researchers to assemble on their own. Since their inception, the MODs for the predominant biomedical model organisms [Mus sp (laboratory mouse), Saccharomyces cerevisiae, Drosophila melanogaster, Caenorhabditis elegans, Danio rerio, and Rattus norvegicus] along with the GOC have operated as a network of independent, highly collaborative genome resources. In 2016, these six MODs and the GOC joined forces as the Alliance of Genome Resources (the Alliance). By implementing shared programmatic access methods and data-specific web pages with a unified "look and feel," the Alliance is tackling barriers that have limited the ability of researchers to easily compare common data types and annotations across model organisms. To adapt to the rapidly changing landscape for evaluating and funding core data resources, the Alliance is building a modern, extensible, and operationally efficient "knowledge commons" for model organisms using shared, modular infrastructure

OntoAIMS: ontological approach to courseware authoring

In this paper we discuss how current ontology concepts can be beneficial for more flexible and semantic rich description of the authoring process and for the provision of authoring support of Intelligent Educational Systems (IES) with respect to the three main authoring modules: domain editing, course composition and resource management. We take a semantic perspective on the knowledge representation within such systems and explore the interoperability between the various ontological structures for domain, instructional and resource modeling and the modeling of the entire authoring process. We build upon our research on Authoring Task Ontology and exemplify it within OntoAIMS system. We present authoring scenarios and show their mapping with authoring task ontology. Further we discuss the OntoAIMS framework for management of electronic learning objects (resources) and their usage in the automatic generation of course templates for the authors. Finally, we describe our architecture, based on the ontological specification of the authoring process