2,611 research outputs found
Load-Varying LINPACK: A Benchmark for Evaluating Energy Efficiency in High-End Computing
For decades, performance has driven the high-end computing (HEC) community. However, as highlighted in recent exascale studies that chart a path from petascale to exascale computing, power consumption is fast becoming the major design constraint in HEC. Consequently, the HEC community needs to address this issue in future petascale and exascale computing systems.
Current scientific benchmarks, such as LINPACK and SPEChpc, only evaluate HEC systems when running at full throttle, i.e., 100% workload, resulting in a focus on performance and ignoring the issues of power and energy consumption. In contrast, efforts like SPECpower evaluate the energy efficiency of a compute server at varying workloads. This is analogous to evaluating the energy efficiency (i.e., fuel efficiency) of an automobile at varying speeds (e.g., miles per gallon highway versus city). SPECpower, however, only evaluates the energy efficiency of a single compute server rather than a HEC system; furthermore, it is based on SPEC's Java Business Benchmarks (SPECjbb) rather than a scientific benchmark. Given the absence of a load-varying scientific benchmark to evaluate the energy efficiency of HEC systems at different workloads, we propose the load-varying LINPACK (LV-LINPACK) benchmark. In this paper, we identify application parameters that affect performance and provide a methodology to vary the workload of LINPACK, thus enabling a more rigorous study of energy efficiency in supercomputers, or more generally, HEC
HPC Cloud for Scientific and Business Applications: Taxonomy, Vision, and Research Challenges
High Performance Computing (HPC) clouds are becoming an alternative to
on-premise clusters for executing scientific applications and business
analytics services. Most research efforts in HPC cloud aim to understand the
cost-benefit of moving resource-intensive applications from on-premise
environments to public cloud platforms. Industry trends show hybrid
environments are the natural path to get the best of the on-premise and cloud
resources---steady (and sensitive) workloads can run on on-premise resources
and peak demand can leverage remote resources in a pay-as-you-go manner.
Nevertheless, there are plenty of questions to be answered in HPC cloud, which
range from how to extract the best performance of an unknown underlying
platform to what services are essential to make its usage easier. Moreover, the
discussion on the right pricing and contractual models to fit small and large
users is relevant for the sustainability of HPC clouds. This paper brings a
survey and taxonomy of efforts in HPC cloud and a vision on what we believe is
ahead of us, including a set of research challenges that, once tackled, can
help advance businesses and scientific discoveries. This becomes particularly
relevant due to the fast increasing wave of new HPC applications coming from
big data and artificial intelligence.Comment: 29 pages, 5 figures, Published in ACM Computing Surveys (CSUR
On the acceleration of wavefront applications using distributed many-core architectures
In this paper we investigate the use of distributed graphics processing unit (GPU)-based architectures to accelerate pipelined wavefront applications—a ubiquitous class of parallel algorithms used for the solution of a number of scientific and engineering applications. Specifically, we employ a recently developed port of the LU solver (from the NAS Parallel Benchmark suite) to investigate the performance of these algorithms on high-performance computing solutions from NVIDIA (Tesla C1060 and C2050) as well as on traditional clusters (AMD/InfiniBand and IBM BlueGene/P). Benchmark results are presented for problem classes A to C and a recently developed performance model is used to provide projections for problem classes D and E, the latter of which represents a billion-cell problem. Our results demonstrate that while the theoretical performance of GPU solutions will far exceed those of many traditional technologies, the sustained application performance is currently comparable for scientific wavefront applications. Finally, a breakdown of the GPU solution is conducted, exposing PCIe overheads and decomposition constraints. A new k-blocking strategy is proposed to improve the future performance of this class of algorithm on GPU-based architectures
A methodology for full-system power modeling in heterogeneous data centers
The need for energy-awareness in current data centers has encouraged the use of power modeling to estimate their power consumption. However, existing models present noticeable limitations, which make them application-dependent, platform-dependent, inaccurate, or computationally complex. In this paper, we propose a platform-and application-agnostic methodology for full-system power modeling in heterogeneous data centers that overcomes those limitations. It derives a single model per platform, which works with high accuracy for heterogeneous applications with different patterns of resource usage and energy consumption, by systematically selecting a minimum set of resource usage indicators and extracting complex relations among them that capture the impact on energy consumption of all the resources in the system. We demonstrate our methodology by generating power models for heterogeneous platforms with very different power consumption profiles. Our validation experiments with real Cloud applications show that such models provide high accuracy (around 5% of average estimation error).This work is supported by the Spanish Ministry of Economy and Competitiveness under contract TIN2015-65316-P, by the Gener-
alitat de Catalunya under contract 2014-SGR-1051, and by the European Commission under FP7-SMARTCITIES-2013 contract 608679 (RenewIT) and FP7-ICT-2013-10 contracts 610874 (AS- CETiC) and 610456 (EuroServer).Peer ReviewedPostprint (author's final draft
Parallelising wavefront applications on general-purpose GPU devices
Pipelined wavefront applications form a large portion of the high performance scientific computing workloads at supercomputing centres. This paper investigates the viability of graphics processing units (GPUs) for the acceleration of these codes, using NVIDIA's Compute Unified Device Architecture (CUDA). We identify the optimisations suitable for this new architecture and quantify the characteristics of those wavefront codes that are likely to experience speedups
An investigation of the performance portability of OpenCL
This paper reports on the development of an MPI/OpenCL implementation of LU, an application-level benchmark from the NAS Parallel Benchmark Suite. An account of the design decisions addressed during the development of this code is presented, demonstrating the importance of memory arrangement and work-item/work-group distribution strategies when applications are deployed on different device types. The resulting platform-agnostic, single source application is benchmarked on a number of different architectures, and is shown to be 1.3–1.5× slower than native FORTRAN 77 or CUDA implementations on a single node and 1.3–3.1× slower on multiple nodes. We also explore the potential performance gains of OpenCL’s device fissioning capability, demonstrating up to a 3× speed-up over our original OpenCL implementation
Early Observations on Performance of Google Compute Engine for Scientific Computing
Although Cloud computing emerged for business applications in industry,
public Cloud services have been widely accepted and encouraged for scientific
computing in academia. The recently available Google Compute Engine (GCE) is
claimed to support high-performance and computationally intensive tasks, while
little evaluation studies can be found to reveal GCE's scientific capabilities.
Considering that fundamental performance benchmarking is the strategy of
early-stage evaluation of new Cloud services, we followed the Cloud Evaluation
Experiment Methodology (CEEM) to benchmark GCE and also compare it with Amazon
EC2, to help understand the elementary capability of GCE for dealing with
scientific problems. The experimental results and analyses show both potential
advantages of, and possible threats to applying GCE to scientific computing.
For example, compared to Amazon's EC2 service, GCE may better suit applications
that require frequent disk operations, while it may not be ready yet for single
VM-based parallel computing. Following the same evaluation methodology,
different evaluators can replicate and/or supplement this fundamental
evaluation of GCE. Based on the fundamental evaluation results, suitable GCE
environments can be further established for case studies of solving real
science problems.Comment: Proceedings of the 5th International Conference on Cloud Computing
Technologies and Science (CloudCom 2013), pp. 1-8, Bristol, UK, December 2-5,
201
Solving the Klein-Gordon equation using Fourier spectral methods: A benchmark test for computer performance
The cubic Klein-Gordon equation is a simple but non-trivial partial
differential equation whose numerical solution has the main building blocks
required for the solution of many other partial differential equations. In this
study, the library 2DECOMP&FFT is used in a Fourier spectral scheme to solve
the Klein-Gordon equation and strong scaling of the code is examined on
thirteen different machines for a problem size of 512^3. The results are useful
in assessing likely performance of other parallel fast Fourier transform based
programs for solving partial differential equations. The problem is chosen to
be large enough to solve on a workstation, yet also of interest to solve
quickly on a supercomputer, in particular for parametric studies. Unlike other
high performance computing benchmarks, for this problem size, the time to
solution will not be improved by simply building a bigger supercomputer.Comment: 10 page
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