Parallelizing support vector machines for scalable image annotation

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University.Machine learning techniques have facilitated image retrieval by automatically classifying and annotating images with keywords. Among them Support Vector Machines (SVMs) are used extensively due to their generalization properties. However, SVM training is notably a computationally intensive process especially when the training dataset is large. In this thesis distributed computing paradigms have been investigated to speed up SVM training, by partitioning a large training dataset into small data chunks and process each chunk in parallel utilizing the resources of a cluster of computers. A resource aware parallel SVM algorithm is introduced for large scale image annotation in parallel using a cluster of computers. A genetic algorithm based load balancing scheme is designed to optimize the performance of the algorithm in heterogeneous computing environments. SVM was initially designed for binary classifications. However, most classification problems arising in domains such as image annotation usually involve more than two classes. A resource aware parallel multiclass SVM algorithm for large scale image annotation in parallel using a cluster of computers is introduced. The combination of classifiers leads to substantial reduction of classification error in a wide range of applications. Among them SVM ensembles with bagging is shown to outperform a single SVM in terms of classification accuracy. However, SVM ensembles training are notably a computationally intensive process especially when the number replicated samples based on bootstrapping is large. A distributed SVM ensemble algorithm for image annotation is introduced which re-samples the training data based on bootstrapping and training SVM on each sample in parallel using a cluster of computers. The above algorithms are evaluated in both experimental and simulation environments showing that the distributed SVM algorithm, distributed multiclass SVM algorithm, and distributed SVM ensemble algorithm, reduces the training time significantly while maintaining a high level of accuracy in classifications

One-Class Classification: Taxonomy of Study and Review of Techniques

One-class classification (OCC) algorithms aim to build classification models when the negative class is either absent, poorly sampled or not well defined. This unique situation constrains the learning of efficient classifiers by defining class boundary just with the knowledge of positive class. The OCC problem has been considered and applied under many research themes, such as outlier/novelty detection and concept learning. In this paper we present a unified view of the general problem of OCC by presenting a taxonomy of study for OCC problems, which is based on the availability of training data, algorithms used and the application domains applied. We further delve into each of the categories of the proposed taxonomy and present a comprehensive literature review of the OCC algorithms, techniques and methodologies with a focus on their significance, limitations and applications. We conclude our paper by discussing some open research problems in the field of OCC and present our vision for future research.Comment: 24 pages + 11 pages of references, 8 figure

Machine Learning and Integrative Analysis of Biomedical Big Data.

Recent developments in high-throughput technologies have accelerated the accumulation of massive amounts of omics data from multiple sources: genome, epigenome, transcriptome, proteome, metabolome, etc. Traditionally, data from each source (e.g., genome) is analyzed in isolation using statistical and machine learning (ML) methods. Integrative analysis of multi-omics and clinical data is key to new biomedical discoveries and advancements in precision medicine. However, data integration poses new computational challenges as well as exacerbates the ones associated with single-omics studies. Specialized computational approaches are required to effectively and efficiently perform integrative analysis of biomedical data acquired from diverse modalities. In this review, we discuss state-of-the-art ML-based approaches for tackling five specific computational challenges associated with integrative analysis: curse of dimensionality, data heterogeneity, missing data, class imbalance and scalability issues

An analysis of ensemble pruning techniques based on ordered aggregation

Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works. G. Martínez-Muñoz, D. Hernández-Lobato and A. Suárez, "An analysis of ensemble pruning techniques based on ordered aggregation", IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 31, no. 2, pp. 245-249, February 2009Several pruning strategies that can be used to reduce the size and increase the accuracy of bagging ensembles are analyzed. These heuristics select subsets of complementary classifiers that, when combined, can perform better than the whole ensemble. The pruning methods investigated are based on modifying the order of aggregation of classifiers in the ensemble. In the original bagging algorithm, the order of aggregation is left unspecified. When this order is random, the generalization error typically decreases as the number of classifiers in the ensemble increases. If an appropriate ordering for the aggregation process is devised, the generalization error reaches a minimum at intermediate numbers of classifiers. This minimum lies below the asymptotic error of bagging. Pruned ensembles are obtained by retaining a fraction of the classifiers in the ordered ensemble. The performance of these pruned ensembles is evaluated in several benchmark classification tasks under different training conditions. The results of this empirical investigation show that ordered aggregation can be used for the efficient generation of pruned ensembles that are competitive, in terms of performance and robustness of classification, with computationally more costly methods that directly select optimal or near-optimal subensembles.The authors acknowledge support form the Spanish Ministerio de Educación y Ciencia under Project TIN2007-66862-C02-0

Machine learning for network based intrusion detection: an investigation into discrepancies in findings with the KDD cup '99 data set and multi-objective evolution of neural network classifier ensembles from imbalanced data.

For the last decade it has become commonplace to evaluate machine learning techniques for network based intrusion detection on the KDD Cup '99 data set. This data set has served well to demonstrate that machine learning can be useful in intrusion detection. However, it has undergone some criticism in the literature, and it is out of date. Therefore, some researchers question the validity of the findings reported based on this data set. Furthermore, as identified in this thesis, there are also discrepancies in the findings reported in the literature. In some cases the results are contradictory. Consequently, it is difficult to analyse the current body of research to determine the value in the findings. This thesis reports on an empirical investigation to determine the underlying causes of the discrepancies. Several methodological factors, such as choice of data subset, validation method and data preprocessing, are identified and are found to affect the results significantly. These findings have also enabled a better interpretation of the current body of research. Furthermore, the criticisms in the literature are addressed and future use of the data set is discussed, which is important since researchers continue to use it due to a lack of better publicly available alternatives. Due to the nature of the intrusion detection domain, there is an extreme imbalance among the classes in the KDD Cup '99 data set, which poses a significant challenge to machine learning. In other domains, researchers have demonstrated that well known techniques such as Artificial Neural Networks (ANNs) and Decision Trees (DTs) often fail to learn the minor class(es) due to class imbalance. However, this has not been recognized as an issue in intrusion detection previously. This thesis reports on an empirical investigation that demonstrates that it is the class imbalance that causes the poor detection of some classes of intrusion reported in the literature. An alternative approach to training ANNs is proposed in this thesis, using Genetic Algorithms (GAs) to evolve the weights of the ANNs, referred to as an Evolutionary Neural Network (ENN). When employing evaluation functions that calculate the fitness proportionally to the instances of each class, thereby avoiding a bias towards the major class(es) in the data set, significantly improved true positive rates are obtained whilst maintaining a low false positive rate. These findings demonstrate that the issues of learning from imbalanced data are not due to limitations of the ANNs; rather the training algorithm. Moreover, the ENN is capable of detecting a class of intrusion that has been reported in the literature to be undetectable by ANNs. One limitation of the ENN is a lack of control of the classification trade-off the ANNs obtain. This is identified as a general issue with current approaches to creating classifiers. Striving to create a single best classifier that obtains the highest accuracy may give an unfruitful classification trade-off, which is demonstrated clearly in this thesis. Therefore, an extension of the ENN is proposed, using a Multi-Objective GA (MOGA), which treats the classification rate on each class as a separate objective. This approach produces a Pareto front of non-dominated solutions that exhibit different classification trade-offs, from which the user can select one with the desired properties. The multi-objective approach is also utilised to evolve classifier ensembles, which yields an improved Pareto front of solutions. Furthermore, the selection of classifier members for the ensembles is investigated, demonstrating how this affects the performance of the resultant ensembles. This is a key to explaining why some classifier combinations fail to give fruitful solutions