Towards a linked open data edition of Sumerian corpora

Linguistic Linked Open Data (LLOD) is a flourishing line of research in the language resource community, so far mostly adopted for selected aspects of linguistics, natural language processing and the semantic web, as well as for practical applications in localization and lexicography. Yet, computational philology seems to be somewhat decoupled from the recent progress in this area: even though LOD as a concept is gaining significant popularity in Digital Humanities, existing LLOD standards and vocabularies are not widely used in this community, and philological resources are underrepresented in the LLOD cloud diagram (http://linguistic-lod.org/llod-cloud). In this paper, we present an application of Linguistic Linked Open Data in Assyriology. We describe the LLOD edition of a linguistically annotated corpus of Sumerian, as well as its linking with lexical resources, repositories of annotation terminology, and the museum collections in which the artifacts bearing these texts are kept. The chosen corpus is the Electronic Text Corpus of Sumerian Royal Inscriptions, a well curated and linguistically annotated archive of Sumerian text, in preparation for the creating and linking of other corpora of cuneiform texts, such as the corpus of Ur III administrative and legal Sumerian texts, as part of the Machine Translation and Automated Analysis of Cuneiform Languages project (https://cdli-gh.github.io/mtaac/)

Automated Development of Semantic Data Models Using Scientific Publications

The traditional methods for analyzing information in digital documents have evolved with the ever-increasing volume of data. Some challenges in analyzing scientific publications include the lack of a unified vocabulary and a defined context, different standards and formats in presenting information, various types of data, and diverse areas of knowledge. These challenges hinder detecting, understanding, comparing, sharing, and querying information rapidly. I design a dynamic conceptual data model with common elements in publications from any domain, such as context, metadata, and tables. To enhance the models, I use related definitions contained in ontologies and the Internet. Therefore, this dissertation generates semantically-enriched data models from digital publications based on the Semantic Web principles, which allow people and computers to work cooperatively. Finally, this work uses a vocabulary and ontologies to generate a structured characterization and organize the data models. This organization allows integration, sharing, management, and comparing and contrasting information from publications

OntoChatGPT Information System: Ontology-Driven Structured Prompts for ChatGPT Meta-Learning

This research presents a comprehensive methodology for utilizing an ontology-driven structured prompts system in interplay with ChatGPT, a widely used large language model (LLM). The study develops formal models, both information and functional, and establishes the methodological foundations for integrating ontology-driven prompts with ChatGPT's meta-learning capabilities. The resulting productive triad comprises the methodological foundations, advanced information technology, and the OntoChatGPT system, which collectively enhance the effectiveness and performance of chatbot systems. The implementation of this technology is demonstrated using the Ukrainian language within the domain of rehabilitation. By applying the proposed methodology, the OntoChatGPT system effectively extracts entities from contexts, classifies them, and generates relevant responses. The study highlights the versatility of the methodology, emphasizing its applicability not only to ChatGPT but also to other chatbot systems based on LLMs, such as Google's Bard utilizing the PaLM 2 LLM. The underlying principles of meta-learning, structured prompts, and ontology-driven information retrieval form the core of the proposed methodology, enabling their adaptation and utilization in various LLM-based systems. This versatile approach opens up new possibilities for NLP and dialogue systems, empowering developers to enhance the performance and functionality of chatbot systems across different domains and languages.Comment: 14 pages, 1 figure. Published. International Journal of Computing, 22(2), 170-183. https://doi.org/10.47839/ijc.22.2.308

The ORKG R Package and Its Use in Data Science

Research infrastructures and services provide access to (meta)data via user interfaces and APIs. The more advanced services also support access through (Python, R, etc.) packages that users can use in computational environments. For scientific information as a particular kind of research data, the Open Research Knowledge Graph (ORKG) is an example of an advanced service that also supports accessing data from Python scripts. Since many research communities use R as the statistical language of choice, we have developed the ORKG R package to support accessing and processing ORKG data directly from R scripts. Inspired by the Python library, the ORKG R package supports a comparable set of features through a similar programmatic interface. Having developed the ORKG R package, we demonstrate its use in various applications grounded in life science and soil science research fields. As an additional key contribution of this work, we show how the ORKG R package can be used in combination with ORKG templates to support the pre-publication production and publication of machine-readable scientific information, during the data analysis phase of the research life cycle and directly in the scripts that produce scientific information. This new mode of machine-readable scientific information production complements the post-publication Crowdsourcing-based manual and NLP-based automated approaches with the major advantages of unmatched high accuracy and fine granularity

Interoperability and FAIRness through a novel combination of Web technologies

Data in the life sciences are extremely diverse and are stored in a broad spectrum of repositories ranging from those designed for particular data types (such as KEGG for pathway data or UniProt for protein data) to those that are general-purpose (such as FigShare, Zenodo, Dataverse or EUDAT). These data have widely different levels of sensitivity and security considerations. For example, clinical observations about genetic mutations in patients are highly sensitive, while observations of species diversity are generally not. The lack of uniformity in data models from one repository to another, and in the richness and availability of metadata descriptions, makes integration and analysis of these data a manual, time-consuming task with no scalability. Here we explore a set of resource-oriented Web design patterns for data discovery, accessibility, transformation, and integration that can be implemented by any general- or special-purpose repository as a means to assist users in finding and reusing their data holdings. We show that by using off-the-shelf technologies, interoperability can be achieved atthe level of an individual spreadsheet cell. We note that the behaviours of this architecture compare favourably to the desiderata defined by the FAIR Data Principles, and can therefore represent an exemplar implementation of those principles. The proposed interoperability design patterns may be used to improve discovery and integration of both new and legacy data, maximizing the utility of all scholarly outputs

Linked Data and Linked Open Data Projects for Libraries, Archives and Museums: Constructing Pathways to Information Discovery and Cultural Heritage Sector Collaboration

This paper examines current Cultural Heritage-based Linked data and linked open data projects developed by Libraries, Archives and Museums (LAMs). The following research questions are explored: R1: Are there similarities and/or differences between libraries, archives and museums in how their linked data and linked open data projects, approaches and strategies are being implemented? R2: What specific linked data and linked open data tools and tactics are being employed, and are there key variations between libraries, archives and museums? The linked data/linked open data landscape has advanced since Tim Berners-Lee (et al.) introduced the concept of the Semantic Web, but challenges for LAMs remain as they work with their collections’ data to create new web-based projects. Fundamental to these efforts is the creation, linking, and publishing of good quality metadata that will allow LAM collections to be discovered, accessed, and disseminated through viable methods. Trends across LAM sectors for linked data and linked open data projects include: global communication and collaborative research, use of wiki-based technologies, and efforts to improve sustainability. Application concepts from the Digital Curation Centre’s Curation Lifecycle Model and Adrian Brown’s Digital Preservation Maturity Model may help guide LAMs toward greater sustainability of linked data and linked open data collections’ projects. Keywords

Knowledge extraction from unstructured data and classification through distributed ontologies

The World Wide Web has changed the way humans use and share any kind of information. The Web removed several access barriers to the information published and has became an enormous space where users can easily navigate through heterogeneous resources (such as linked documents) and can easily edit, modify, or produce them. Documents implicitly enclose information and relationships among them which become only accessible to human beings. Indeed, the Web of documents evolved towards a space of data silos, linked each other only through untyped references (such as hypertext references) where only humans were able to understand. A growing desire to programmatically access to pieces of data implicitly enclosed in documents has characterized the last efforts of the Web research community. Direct access means structured data, thus enabling computing machinery to easily exploit the linking of different data sources. It has became crucial for the Web community to provide a technology stack for easing data integration at large scale, first structuring the data using standard ontologies and afterwards linking them to external data. Ontologies became the best practices to define axioms and relationships among classes and the Resource Description Framework (RDF) became the basic data model chosen to represent the ontology instances (i.e. an instance is a value of an axiom, class or attribute). Data becomes the new oil, in particular, extracting information from semi-structured textual documents on the Web is key to realize the Linked Data vision. In the literature these problems have been addressed with several proposals and standards, that mainly focus on technologies to access the data and on formats to represent the semantics of the data and their relationships. With the increasing of the volume of interconnected and serialized RDF data, RDF repositories may suffer from data overloading and may become a single point of failure for the overall Linked Data vision. One of the goals of this dissertation is to propose a thorough approach to manage the large scale RDF repositories, and to distribute them in a redundant and reliable peer-to-peer RDF architecture. The architecture consists of a logic to distribute and mine the knowledge and of a set of physical peer nodes organized in a ring topology based on a Distributed Hash Table (DHT). Each node shares the same logic and provides an entry point that enables clients to query the knowledge base using atomic, disjunctive and conjunctive SPARQL queries. The consistency of the results is increased using data redundancy algorithm that replicates each RDF triple in multiple nodes so that, in the case of peer failure, other peers can retrieve the data needed to resolve the queries. Additionally, a distributed load balancing algorithm is used to maintain a uniform distribution of the data among the participating peers by dynamically changing the key space assigned to each node in the DHT. Recently, the process of data structuring has gained more and more attention when applied to the large volume of text information spread on the Web, such as legacy data, news papers, scientific papers or (micro-)blog posts. This process mainly consists in three steps: \emph{i)} the extraction from the text of atomic pieces of information, called named entities; \emph{ii)} the classification of these pieces of information through ontologies; \emph{iii)} the disambigation of them through Uniform Resource Identifiers (URIs) identifying real world objects. As a step towards interconnecting the web to real world objects via named entities, different techniques have been proposed. The second objective of this work is to propose a comparison of these approaches in order to highlight strengths and weaknesses in different scenarios such as scientific and news papers, or user generated contents. We created the Named Entity Recognition and Disambiguation (NERD) web framework, publicly accessible on the Web (through REST API and web User Interface), which unifies several named entity extraction technologies. Moreover, we proposed the NERD ontology, a reference ontology for comparing the results of these technologies. Recently, the NERD ontology has been included in the NIF (Natural language processing Interchange Format) specification, part of the Creating Knowledge out of Interlinked Data (LOD2) project. Summarizing, this dissertation defines a framework for the extraction of knowledge from unstructured data and its classification via distributed ontologies. A detailed study of the Semantic Web and knowledge extraction fields is proposed to define the issues taken under investigation in this work. Then, it proposes an architecture to tackle the single point of failure issue introduced by the RDF repositories spread within the Web. Although the use of ontologies enables a Web where data is structured and comprehensible by computing machinery, human users may take advantage of it especially for the annotation task. Hence, this work describes an annotation tool for web editing, audio and video annotation in a web front end User Interface powered on the top of a distributed ontology. Furthermore, this dissertation details a thorough comparison of the state of the art of named entity technologies. The NERD framework is presented as technology to encompass existing solutions in the named entity extraction field and the NERD ontology is presented as reference ontology in the field. Finally, this work highlights three use cases with the purpose to reduce the amount of data silos spread within the Web: a Linked Data approach to augment the automatic classification task in a Systematic Literature Review, an application to lift educational data stored in Sharable Content Object Reference Model (SCORM) data silos to the Web of data and a scientific conference venue enhancer plug on the top of several data live collectors. Significant research efforts have been devoted to combine the efficiency of a reliable data structure and the importance of data extraction techniques. This dissertation opens different research doors which mainly join two different research communities: the Semantic Web and the Natural Language Processing community. The Web provides a considerable amount of data where NLP techniques may shed the light within it. The use of the URI as a unique identifier may provide one milestone for the materialization of entities lifted from a raw text to real world object