Hyperspectral colon tissue cell classification

A novel algorithm to discriminate between normal and malignant tissue cells of the human colon is presented. The microscopic level images of human colon tissue cells were acquired using hyperspectral imaging technology at contiguous wavelength intervals of visible light. While hyperspectral imagery data provides a wealth of information, its large size normally means high computational processing complexity. Several methods exist to avoid the so-called curse of dimensionality and hence reduce the computational complexity. In this study, we experimented with Principal Component Analysis (PCA) and two modifications of Independent Component Analysis (ICA). In the first stage of the algorithm, the extracted components are used to separate four constituent parts of the colon tissue: nuclei, cytoplasm, lamina propria, and lumen. The segmentation is performed in an unsupervised fashion using the nearest centroid clustering algorithm. The segmented image is further used, in the second stage of the classification algorithm, to exploit the spatial relationship between the labeled constituent parts. Experimental results using supervised Support Vector Machines (SVM) classification based on multiscale morphological features reveal the discrimination between normal and malignant tissue cells with a reasonable degree of accuracy

A case study of advancing remote sensing image analysis

Big data and cloud computing are two phenomena, which have gained significant reputation over the last few years. In computer science the approach shifted towards distributed architectures and high performance computing. In case of geographical information systems (GIS) and remote sensing image analysis, the new paradigms have already been successfully applied to several problems, and systems have been developed to support processing of geographical and remote sensing data in the cloud. However, due to different circumstances many previous workflows have to be reconsidered and redesigned. Our goal is to show a way how the existing approaches to remote sensing image analysis can be advanced to take advantages of these new paradigms. The task aiming in shifting the algorithms shall require a moderate effort and must avoid the complete redesign and reimplementation of the existing approaches. We present the whole journey as a case study using an existing industrial workflow for demonstration. Nevertheless, we define the rules of thumb, which can come in hand when shifting any existing GIS workflows. Our case study is the workflow of waterlogging and flood detection, which is an operative task at the Institute of Geodesy, Cartography and Remote Sensing (FÖMI). This task in currently operational using a semi-automatic single machine approach involving multiple software. The workflow is neither efficient nor scalable, thus it is not applicable in emergency situations where quick response is required. We present an approach utilizing distributed computing, which enables the automated execution of this task on large input data with much better response time. The approach is based on the well-known MapReduce paradigm, its open-source implementation, the Apache Hadoop framework and the AEGIS geospatial toolkit. This enables the replacement of multiple software to a single, generic framework. Results show that significant performance benefits can be achieved at the expense of minor accuracy loss

Semantic Cross-View Matching

Matching cross-view images is challenging because the appearance and viewpoints are significantly different. While low-level features based on gradient orientations or filter responses can drastically vary with such changes in viewpoint, semantic information of images however shows an invariant characteristic in this respect. Consequently, semantically labeled regions can be used for performing cross-view matching. In this paper, we therefore explore this idea and propose an automatic method for detecting and representing the semantic information of an RGB image with the goal of performing cross-view matching with a (non-RGB) geographic information system (GIS). A segmented image forms the input to our system with segments assigned to semantic concepts such as traffic signs, lakes, roads, foliage, etc. We design a descriptor to robustly capture both, the presence of semantic concepts and the spatial layout of those segments. Pairwise distances between the descriptors extracted from the GIS map and the query image are then used to generate a shortlist of the most promising locations with similar semantic concepts in a consistent spatial layout. An experimental evaluation with challenging query images and a large urban area shows promising results