Cloud benchmarking for maximising performance of scientific applications

This research was pursued under the EPSRC grant, EP/K015745/1, a Royal Society Industry Fellowship and an AWS Education Research grant.How can applications be deployed on the cloud to achieve maximum performance? This question is challenging to address with the availability of a wide variety of cloud Virtual Machines (VMs) with different performance capabilities. The research reported in this paper addresses the above question by proposing a six step benchmarking methodology in which a user provides a set of weights that indicate how important memory, local communication, computation and storage related operations are to an application. The user can either provide a set of four abstract weights or eight fine grain weights based on the knowledge of the application. The weights along with benchmarking data collected from the cloud are used to generate a set of two rankings - one based only on the performance of the VMs and the other takes both performance and costs into account. The rankings are validated on three case study applications using two validation techniques. The case studies on a set of experimental VMs highlight that maximum performance can be achieved by the three top ranked VMs and maximum performance in a cost-effective manner is achieved by at least one of the top three ranked VMs produced by the methodology.PostprintPeer reviewe

An Approach for Realistically Simulating the Performance of Scientific Applications on High Performance Computing Systems

Scientific applications often contain large, computationally-intensive, and irregular parallel loops or tasks that exhibit stochastic characteristics. Applications may suffer from load imbalance during their execution on high-performance computing (HPC) systems due to such characteristics. Dynamic loop self-scheduling (DLS) techniques are instrumental in improving the performance of scientific applications on HPC systems via load balancing. Selecting a DLS technique that results in the best performance for different problems and system sizes requires a large number of exploratory experiments. A theoretical model that can be used to predict the scheduling technique that yields the best performance for a given problem and system has not yet been identified. Therefore, simulation is the most appropriate approach for conducting such exploratory experiments with reasonable costs. This work devises an approach to realistically simulate computationally-intensive scientific applications that employ DLS and execute on HPC systems. Several approaches to represent the application tasks (or loop iterations) are compared to establish their influence on the simulative application performance. A novel simulation strategy is introduced, which transforms a native application code into a simulative code. The native and simulative performance of two computationally-intensive scientific applications are compared to evaluate the realism of the proposed simulation approach. The comparison of the performance characteristics extracted from the native and simulative performance shows that the proposed simulation approach fully captured most of the performance characteristics of interest. This work shows and establishes the importance of simulations that realistically predict the performance of DLS techniques for different applications and system configurations