Process Calculi Abstractions for Biology

Several approaches have been proposed to model biological systems by means of the formal techniques and tools available in computer science. To mention just a few of them, some representations are inspired by Petri Nets theory, and some other by stochastic processes. A most recent approach consists in interpreting the living entities as terms of process calculi where the behavior of the represented systems can be inferred by applying syntax-driven rules. A comprehensive picture of the state of the art of the process calculi approach to biological modeling is still missing. This paper goes in the direction of providing such a picture by presenting a comparative survey of the process calculi that have been used and proposed to describe the behavior of living entities. This is the preliminary version of a paper that was published in Algorithmic Bioprocesses. The original publication is available at http://www.springer.com/computer/foundations/book/978-3-540-88868-

Two Decades of Maude

This paper is a tribute to José Meseguer, from the rest of us in the Maude team, reviewing the past, the present, and the future of the language and system with which we have been working for around two decades under his leadership. After reviewing the origins and the language's main features, we present the latest additions to the language and some features currently under development. This paper is not an introduction to Maude, and some familiarity with it and with rewriting logic are indeed assumed.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech

Platform Dependent Verification: On Engineering Verification Tools for 21st Century

The paper overviews recent developments in platform-dependent explicit-state LTL model checking.Comment: In Proceedings PDMC 2011, arXiv:1111.006

On the Duality of Probing and Fault Attacks

In this work we investigate the problem of simultaneous privacy and integrity protection in cryptographic circuits. We consider a white-box scenario with a powerful, yet limited attacker. A concise metric for the level of probing and fault security is introduced, which is directly related to the capabilities of a realistic attacker. In order to investigate the interrelation of probing and fault security we introduce a common mathematical framework based on the formalism of information and coding theory. The framework unifies the known linear masking schemes. We proof a central theorem about the properties of linear codes which leads to optimal secret sharing schemes. These schemes provide the lower bound for the number of masks needed to counteract an attacker with a given strength. The new formalism reveals an intriguing duality principle between the problems of probing and fault security, and provides a unified view on privacy and integrity protection using error detecting codes. Finally, we introduce a new class of linear tamper-resistant codes. These are eligible to preserve security against an attacker mounting simultaneous probing and fault attacks