An Algebra of Hierarchical Graphs

We define an algebraic theory of hierarchical graphs, whose axioms characterise graph isomorphism: two terms are equated exactly when they represent the same graph. Our algebra can be understood as a high-level language for describing graphs with a node-sharing, embedding structure, and it is then well suited for defining graphical representations of software models where nesting and linking are key aspects

Index to Library Trends Volume 38

published or submitted for publicatio

Satisfiability Modulo ODEs

We study SMT problems over the reals containing ordinary differential equations. They are important for formal verification of realistic hybrid systems and embedded software. We develop delta-complete algorithms for SMT formulas that are purely existentially quantified, as well as exists-forall formulas whose universal quantification is restricted to the time variables. We demonstrate scalability of the algorithms, as implemented in our open-source solver dReal, on SMT benchmarks with several hundred nonlinear ODEs and variables.Comment: Published in FMCAD 201

Glueability of Resource Proof-Structures: Inverting the Taylor Expansion

A Multiplicative-Exponential Linear Logic (MELL) proof-structure can be expanded into a set of resource proof-structures: its Taylor expansion. We introduce a new criterion characterizing those sets of resource proof-structures that are part of the Taylor expansion of some MELL proof-structure, through a rewriting system acting both on resource and MELL proof-structures

Modelling Cell Cycle using Different Levels of Representation

Understanding the behaviour of biological systems requires a complex setting of in vitro and in vivo experiments, which attracts high costs in terms of time and resources. The use of mathematical models allows researchers to perform computerised simulations of biological systems, which are called in silico experiments, to attain important insights and predictions about the system behaviour with a considerably lower cost. Computer visualisation is an important part of this approach, since it provides a realistic representation of the system behaviour. We define a formal methodology to model biological systems using different levels of representation: a purely formal representation, which we call molecular level, models the biochemical dynamics of the system; visualisation-oriented representations, which we call visual levels, provide views of the biological system at a higher level of organisation and are equipped with the necessary spatial information to generate the appropriate visualisation. We choose Spatial CLS, a formal language belonging to the class of Calculi of Looping Sequences, as the formalism for modelling all representation levels. We illustrate our approach using the budding yeast cell cycle as a case study

LCF-style Platform based on Multiway Decision Graphs

AbstractThe combination of state exploration approach (mainly model checking) and deductive reasoning approach (theorem proving) promises to overcome the limitation and to enhance the capabilities of each. In this paper, we are interested in defining a platform for Multiway Decision Graphs (MDGs) in LCF-style theorem prover. We define a platform to represent the MDG operations: conjunction, disjunction, relational product and prune-by-subsumption as a set of inference rules. Based on this platform, the reachability analysis is implemented as a conversion that uses the MDG theory within the HOL theorem prover. Finally, we present some experimental results to show the performance of the MDG operations of our platform

A formal support to business and architectural design for service-oriented systems

Architectural Design Rewriting (ADR) is an approach for the design of software architectures developed within Sensoria by reconciling graph transformation and process calculi techniques. The key feature that makes ADR a suitable and expressive framework is the algebraic handling of structured graphs, which improves the support for specification, analysis and verification of service-oriented architectures and applications. We show how ADR is used as a formal ground for high-level modelling languages and approaches developed within Sensoria

Abstract State Machines 1988-1998: Commented ASM Bibliography

An annotated bibliography of papers which deal with or use Abstract State Machines (ASMs), as of January 1998.Comment: Also maintained as a BibTeX file at http://www.eecs.umich.edu/gasm