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Abstract State Machines 1988-1998: Commented ASM Bibliography
An annotated bibliography of papers which deal with or use Abstract State
Machines (ASMs), as of January 1998.Comment: Also maintained as a BibTeX file at http://www.eecs.umich.edu/gasm
Modelling Cell Cycle using Different Levels of Representation
Understanding the behaviour of biological systems requires a complex setting
of in vitro and in vivo experiments, which attracts high costs in terms of time
and resources. The use of mathematical models allows researchers to perform
computerised simulations of biological systems, which are called in silico
experiments, to attain important insights and predictions about the system
behaviour with a considerably lower cost. Computer visualisation is an
important part of this approach, since it provides a realistic representation
of the system behaviour. We define a formal methodology to model biological
systems using different levels of representation: a purely formal
representation, which we call molecular level, models the biochemical dynamics
of the system; visualisation-oriented representations, which we call visual
levels, provide views of the biological system at a higher level of
organisation and are equipped with the necessary spatial information to
generate the appropriate visualisation. We choose Spatial CLS, a formal
language belonging to the class of Calculi of Looping Sequences, as the
formalism for modelling all representation levels. We illustrate our approach
using the budding yeast cell cycle as a case study
Realizing live sequence charts in SystemVerilog.
The design of an embedded control system starts with an investigation of properties and behaviors of the process evolving within its environment, and an analysis of the requirement for its safety performance. In early stages, system requirements are often specified as scenarios of behavior using sequence charts for different use cases. This specification must be precise, intuitive and expressive enough to capture different aspects of embedded control systems. As a rather rich and useful extension to the classical message sequence charts, live sequence charts (LSC), which provide a rich collection of constructs for specifying both possible and mandatory behaviors, are very suitable for designing an embedded control system. However, it is not a trivial task to realize a high-level design model in executable program codes effectively and correctly. This paper tackles the challenging task by providing a mapping algorithm to automatically synthesize SystemVerilog programs from given LSC specifications
A reconfigurations analogue of Brooks’ theorem.
Let G be a simple undirected graph on n vertices with maximum degree Δ. Brooks’ Theorem states that G has a Δ-colouring unless G is a complete graph, or a cycle with an odd number of vertices. To recolour G is to obtain a new proper colouring by changing the colour of one vertex. We show that from a k-colouring, k > Δ, a Δ-colouring of G can be obtained by a sequence of O(n 2) recolourings using only the original k colours unless
G is a complete graph or a cycle with an odd number of vertices, or
k = Δ + 1, G is Δ-regular and, for each vertex v in G, no two neighbours of v are coloured alike.
We use this result to study the reconfiguration graph R k (G) of the k-colourings of G. The vertex set of R k (G) is the set of all possible k-colourings of G and two colourings are adjacent if they differ on exactly one vertex. It is known that
if k ≤ Δ(G), then R k (G) might not be connected and it is possible that its connected components have superpolynomial diameter,
if k ≥ Δ(G) + 2, then R k (G) is connected and has diameter O(n 2).
We complete this structural classification by settling the missing case:
if k = Δ(G) + 1, then R k (G) consists of isolated vertices and at most one further component which has diameter O(n 2).
We also describe completely the computational complexity classification of the problem of deciding whether two k-colourings of a graph G of maximum degree Δ belong to the same component of R k (G) by settling the case k = Δ(G) + 1. The problem is
O(n 2) time solvable for k = 3,
PSPACE-complete for 4 ≤ k ≤ Δ(G),
O(n) time solvable for k = Δ(G) + 1,
O(1) time solvable for k ≥ Δ(G) + 2 (the answer is always yes)
Index to Library Trends Volume 38
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