PDEs for tensor image processing

Methods based on partial differential equations (PDEs) belong to those image processing techniques that can be extended in a particularly elegant way to tensor fields. In this survey paper the most important PDEs for discontinuity-preserving denoising of tensor fields are reviewed such that the underlying design principles becomes evident. We consider isotropic and anisotropic diffusion filters and their corresponding variational methods, mean curvature motion, and selfsnakes. These filters preserve positive semidefiniteness of any positive semidefinite initial tensor field. Finally we discuss geodesic active contours for segmenting tensor fields. Experiments are presented that illustrate the behaviour of all these methods

A flexible space-variant anisotropic regularisation for image restoration with automated parameter selection

We propose a new space-variant anisotropic regularisation term for variational image restoration, based on the statistical assumption that the gradients of the target image distribute locally according to a bivariate generalised Gaussian distribution. The highly flexible variational structure of the corresponding regulariser encodes several free parameters which hold the potential for faithfully modelling the local geometry in the image and describing local orientation preferences. For an automatic estimation of such parameters, we design a robust maximum likelihood approach and report results on its reliability on synthetic data and natural images. For the numerical solution of the corresponding image restoration model, we use an iterative algorithm based on the Alternating Direction Method of Multipliers (ADMM). A suitable preliminary variable splitting together with a novel result in multivariate non-convex proximal calculus yield a very efficient minimisation algorithm. Several numerical results showing significant quality-improvement of the proposed model with respect to some related state-of-the-art competitors are reported, in particular in terms of texture and detail preservation

Double Diffusion Encoding Prevents Degeneracy in Parameter Estimation of Biophysical Models in Diffusion MRI

Purpose: Biophysical tissue models are increasingly used in the interpretation of diffusion MRI (dMRI) data, with the potential to provide specific biomarkers of brain microstructural changes. However, the general Standard Model has recently shown that model parameter estimation from dMRI data is ill-posed unless very strong magnetic gradients are used. We analyse this issue for the Neurite Orientation Dispersion and Density Imaging with Diffusivity Assessment (NODDIDA) model and demonstrate that its extension from Single Diffusion Encoding (SDE) to Double Diffusion Encoding (DDE) solves the ill-posedness and increases the accuracy of the parameter estimation. Methods: We analyse theoretically the cumulant expansion up to fourth order in b of SDE and DDE signals. Additionally, we perform in silico experiments to compare SDE and DDE capabilities under similar noise conditions. Results: We prove analytically that DDE provides invariant information non-accessible from SDE, which makes the NODDIDA parameter estimation injective. The in silico experiments show that DDE reduces the bias and mean square error of the estimation along the whole feasible region of 5D model parameter space. Conclusions: DDE adds additional information for estimating the model parameters, unexplored by SDE, which is enough to solve the degeneracy in the NODDIDA model parameter estimation.Comment: 22 pages, 7 figure

Anisotropy Across Fields and Scales

This open access book focuses on processing, modeling, and visualization of anisotropy information, which are often addressed by employing sophisticated mathematical constructs such as tensors and other higher-order descriptors. It also discusses adaptations of such constructs to problems encountered in seemingly dissimilar areas of medical imaging, physical sciences, and engineering. Featuring original research contributions as well as insightful reviews for scientists interested in handling anisotropy information, it covers topics such as pertinent geometric and algebraic properties of tensors and tensor fields, challenges faced in processing and visualizing different types of data, statistical techniques for data processing, and specific applications like mapping white-matter fiber tracts in the brain. The book helps readers grasp the current challenges in the field and provides information on the techniques devised to address them. Further, it facilitates the transfer of knowledge between different disciplines in order to advance the research frontiers in these areas. This multidisciplinary book presents, in part, the outcomes of the seventh in a series of Dagstuhl seminars devoted to visualization and processing of tensor fields and higher-order descriptors, which was held in Dagstuhl, Germany, on October 28–November 2, 2018