On the Use of XML in Medical Imaging Web-Based Applications

The rapid growth of digital technology in medical fields over recent years has increased the need for applications able to manage patient medical records, imaging data, and chart information. Web-based applications are implemented with the purpose to link digital databases, storage and transmission protocols, management of large volumes of data and security concepts, allowing the possibility to read, analyze, and even diagnose remotely from the medical center where the information was acquired. The objective of this paper is to analyze the use of the Extensible Markup Language (XML) language in web-based applications that aid in diagnosis or treatment of patients, considering how this protocol allows indexing and exchanging the huge amount of information associated with each medical case. The purpose of this paper is to point out the main advantages and drawbacks of the XML technology in order to provide key ideas for future web-based applicationsPeer ReviewedPostprint (author's final draft

Image mining: trends and developments

[Abstract]: Advances in image acquisition and storage technology have led to tremendous growth in very large and detailed image databases. These images, if analyzed, can reveal useful information to the human users. Image mining deals with the extraction of implicit knowledge, image data relationship, or other patterns not explicitly stored in the images. Image mining is more than just an extension of data mining to image domain. It is an interdisciplinary endeavor that draws upon expertise in computer vision, image processing, image retrieval, data mining, machine learning, database, and artificial intelligence. In this paper, we will examine the research issues in image mining, current developments in image mining, particularly, image mining frameworks, state-of-the-art techniques and systems. We will also identify some future research directions for image mining

Using Document Indexers for Faceted Search in Dataspaces

Efficient information retrieval is essential to enrich user experience when searching for documents in dataspaces. With the continued growth in the volume and complexity of documents, the efficient information retrieval for searches has become increasingly challenging. To improve users’ search experience, faceted search combines direct keyword search methods with faceted browsing using a predefined set of categories (facets). This paper studies a faceted search approach that integrates dynamic facets generation with search. To further enhance the faceted search, alternative indexers based on pre-defined ontology for data repositories within dataspaces are evaluated in terms of execution time and data size. Experimental results suggest that combining the proposed faceted search with appropriate indexers improves search performance enhancing user experience

Privacy-preserving efficient searchable encryption

Data storage and computation outsourcing to third-party managed data centers, in environments such as Cloud Computing, is increasingly being adopted by individuals, organizations, and governments. However, as cloud-based outsourcing models expand to society-critical data and services, the lack of effective and independent control over security and privacy conditions in such settings presents significant challenges. An interesting solution to these issues is to perform computations on encrypted data, directly in the outsourcing servers. Such an approach benefits from not requiring major data transfers and decryptions, increasing performance and scalability of operations. Searching operations, an important application case when cloud-backed repositories increase in number and size, are good examples where security, efficiency, and precision are relevant requisites. Yet existing proposals for searching encrypted data are still limited from multiple perspectives, including usability, query expressiveness, and client-side performance and scalability. This thesis focuses on the design and evaluation of mechanisms for searching encrypted data with improved efficiency, scalability, and usability. There are two particular concerns addressed in the thesis: on one hand, the thesis aims at supporting multiple media formats, especially text, images, and multimodal data (i.e. data with multiple media formats simultaneously); on the other hand the thesis addresses client-side overhead, and how it can be minimized in order to support client applications executing in both high-performance desktop devices and resource-constrained mobile devices. From the research performed to address these issues, three core contributions were developed and are presented in the thesis: (i) CloudCryptoSearch, a middleware system for storing and searching text documents with privacy guarantees, while supporting multiple modes of deployment (user device, local proxy, or computational cloud) and exploring different tradeoffs between security, usability, and performance; (ii) a novel framework for efficiently searching encrypted images based on IES-CBIR, an Image Encryption Scheme with Content-Based Image Retrieval properties that we also propose and evaluate; (iii) MIE, a Multimodal Indexable Encryption distributed middleware that allows storing, sharing, and searching encrypted multimodal data while minimizing client-side overhead and supporting both desktop and mobile devices

On-Demand Big Data Integration: A Hybrid ETL Approach for Reproducible Scientific Research

Scientific research requires access, analysis, and sharing of data that is distributed across various heterogeneous data sources at the scale of the Internet. An eager ETL process constructs an integrated data repository as its first step, integrating and loading data in its entirety from the data sources. The bootstrapping of this process is not efficient for scientific research that requires access to data from very large and typically numerous distributed data sources. a lazy ETL process loads only the metadata, but still eagerly. Lazy ETL is faster in bootstrapping. However, queries on the integrated data repository of eager ETL perform faster, due to the availability of the entire data beforehand. In this paper, we propose a novel ETL approach for scientific data integration, as a hybrid of eager and lazy ETL approaches, and applied both to data as well as metadata. This way, Hybrid ETL supports incremental integration and loading of metadata and data from the data sources. We incorporate a human-in-the-loop approach, to enhance the hybrid ETL, with selective data integration driven by the user queries and sharing of integrated data between users. We implement our hybrid ETL approach in a prototype platform, Obidos, and evaluate it in the context of data sharing for medical research. Obidos outperforms both the eager ETL and lazy ETL approaches, for scientific research data integration and sharing, through its selective loading of data and metadata, while storing the integrated data in a scalable integrated data repository.Comment: Pre-print Submitted to the DMAH Special Issue of the Springer DAPD Journa

Searching Data: A Review of Observational Data Retrieval Practices in Selected Disciplines

A cross-disciplinary examination of the user behaviours involved in seeking and evaluating data is surprisingly absent from the research data discussion. This review explores the data retrieval literature to identify commonalities in how users search for and evaluate observational research data. Two analytical frameworks rooted in information retrieval and science technology studies are used to identify key similarities in practices as a first step toward developing a model describing data retrieval

Content-based Image Retrieval by Spatial Similarity

Similarity-based retrieval of images is an important task in image databases. Most of the user's queries are on retrieving those database images that are spatially similar to a query image. In defence strategies, one wants to know a number of armoured vehicles, such as battle tanks, portable missile launching vehicles, etc. moving towards it, so that one can decide counter strategy. Content-based spatial similarity retrieval of images can be used to locate spatial relationship of various objects in a specific area from the aerial photographs and to retrieve images similar to the query image from image database. A content-based image retrieval system that efficiently and effectively retrieves information from a defence image database along with the architecture for retrieving images by spatial similarity is presented. A robust algorithm SIMdef for retrieval by spatial similarity is proposed that utilises both directional and topological relations for computing similarity between images, retrieves similar images and recognises images even after they undergo modelling transformations (translation, scale and rotation). A case study for some of the common objects, used in defence applications using SIMdef algorithm, has been done

DYNIQX: A novel meta-search engine for the web

The effect of metadata in collection fusion has not been sufficiently studied. In response to this, we present a novel meta-search engine called Dyniqx for metadata based search. Dyniqx integrates search results from search services of documents, images, and videos for generating a unified list of ranked search results. Dyniqx exploits the availability of metadata in search services such as PubMed, Google Scholar, Google Image Search, and Google Video Search etc for fusing search results from heterogeneous search engines. In addition, metadata from these search engines are used for generating dynamic query controls such as sliders and tick boxes etc which are used by users to filter search results. Our preliminary user evaluation shows that Dyniqx can help users complete information search tasks more efficiently and successfully than three well known search engines respectively. We also carried out one controlled user evaluation of the integration of six document/image/video based search engines (Google Scholar, PubMed, Intute, Google Image, Yahoo Image, and Google Video) in Dyniqx. We designed a questionnaire for evaluating different aspect of Dyniqx in assisting users complete search tasks. Each user used Dyniqx to perform a number of search tasks before completing the questionnaire. Our evaluation results confirm the effectiveness of the meta-search of Dyniqx in assisting user search tasks, and provide insights into better designs of the Dyniqx' interface

Ensuring the discoverability of digital images for social work education : an online tagging survey to test controlled vocabularies

The digital age has transformed access to all kinds of educational content not only in text-based format but also digital images and other media. As learning technologists and librarians begin to organise these new media into digital collections for educational purposes, older problems associated with cataloguing and classifying non-text media have re-emerged. At the heart of this issue is the problem of describing complex and highly subjective images in a reliable and consistent manner. This paper reports on the findings of research designed to test the suitability of two controlled vocabularies to index and thereby improve the discoverability of images stored in the Learning Exchange, a repository for social work education and research. An online survey asked respondents to "tag", a series of images and responses were mapped against the two controlled vocabularies. Findings showed that a large proportion of user generated tags could be mapped to the controlled vocabulary terms (or their equivalents). The implications of these findings for indexing and discovering content are discussed in the context of a wider review of the literature on "folksonomies" (or user tagging) versus taxonomies and controlled vocabularies