5,741 research outputs found
XML Matchers: approaches and challenges
Schema Matching, i.e. the process of discovering semantic correspondences
between concepts adopted in different data source schemas, has been a key topic
in Database and Artificial Intelligence research areas for many years. In the
past, it was largely investigated especially for classical database models
(e.g., E/R schemas, relational databases, etc.). However, in the latest years,
the widespread adoption of XML in the most disparate application fields pushed
a growing number of researchers to design XML-specific Schema Matching
approaches, called XML Matchers, aiming at finding semantic matchings between
concepts defined in DTDs and XSDs. XML Matchers do not just take well-known
techniques originally designed for other data models and apply them on
DTDs/XSDs, but they exploit specific XML features (e.g., the hierarchical
structure of a DTD/XSD) to improve the performance of the Schema Matching
process. The design of XML Matchers is currently a well-established research
area. The main goal of this paper is to provide a detailed description and
classification of XML Matchers. We first describe to what extent the
specificities of DTDs/XSDs impact on the Schema Matching task. Then we
introduce a template, called XML Matcher Template, that describes the main
components of an XML Matcher, their role and behavior. We illustrate how each
of these components has been implemented in some popular XML Matchers. We
consider our XML Matcher Template as the baseline for objectively comparing
approaches that, at first glance, might appear as unrelated. The introduction
of this template can be useful in the design of future XML Matchers. Finally,
we analyze commercial tools implementing XML Matchers and introduce two
challenging issues strictly related to this topic, namely XML source clustering
and uncertainty management in XML Matchers.Comment: 34 pages, 8 tables, 7 figure
Entropy-scaling search of massive biological data
Many datasets exhibit a well-defined structure that can be exploited to
design faster search tools, but it is not always clear when such acceleration
is possible. Here, we introduce a framework for similarity search based on
characterizing a dataset's entropy and fractal dimension. We prove that
searching scales in time with metric entropy (number of covering hyperspheres),
if the fractal dimension of the dataset is low, and scales in space with the
sum of metric entropy and information-theoretic entropy (randomness of the
data). Using these ideas, we present accelerated versions of standard tools,
with no loss in specificity and little loss in sensitivity, for use in three
domains---high-throughput drug screening (Ammolite, 150x speedup), metagenomics
(MICA, 3.5x speedup of DIAMOND [3,700x BLASTX]), and protein structure search
(esFragBag, 10x speedup of FragBag). Our framework can be used to achieve
"compressive omics," and the general theory can be readily applied to data
science problems outside of biology.Comment: Including supplement: 41 pages, 6 figures, 4 tables, 1 bo
Data-Driven Shape Analysis and Processing
Data-driven methods play an increasingly important role in discovering
geometric, structural, and semantic relationships between 3D shapes in
collections, and applying this analysis to support intelligent modeling,
editing, and visualization of geometric data. In contrast to traditional
approaches, a key feature of data-driven approaches is that they aggregate
information from a collection of shapes to improve the analysis and processing
of individual shapes. In addition, they are able to learn models that reason
about properties and relationships of shapes without relying on hard-coded
rules or explicitly programmed instructions. We provide an overview of the main
concepts and components of these techniques, and discuss their application to
shape classification, segmentation, matching, reconstruction, modeling and
exploration, as well as scene analysis and synthesis, through reviewing the
literature and relating the existing works with both qualitative and numerical
comparisons. We conclude our report with ideas that can inspire future research
in data-driven shape analysis and processing.Comment: 10 pages, 19 figure
Correcting Knowledge Base Assertions
The usefulness and usability of knowledge bases (KBs) is often limited by quality issues. One common issue is the presence of erroneous assertions, often caused by lexical or semantic confusion. We study the problem of correcting such assertions, and present a general correction framework which combines lexical matching, semantic embedding, soft constraint mining and semantic consistency checking. The framework is evaluated using DBpedia and an enterprise medical KB
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