Improving Feature Selection Techniques for Machine Learning

As a commonly used technique in data preprocessing for machine learning, feature selection identifies important features and removes irrelevant, redundant or noise features to reduce the dimensionality of feature space. It improves efficiency, accuracy and comprehensibility of the models built by learning algorithms. Feature selection techniques have been widely employed in a variety of applications, such as genomic analysis, information retrieval, and text categorization. Researchers have introduced many feature selection algorithms with different selection criteria. However, it has been discovered that no single criterion is best for all applications. We proposed a hybrid feature selection framework called based on genetic algorithms (GAs) that employs a target learning algorithm to evaluate features, a wrapper method. We call it hybrid genetic feature selection (HGFS) framework. The advantages of this approach include the ability to accommodate multiple feature selection criteria and find small subsets of features that perform well for the target algorithm. The experiments on genomic data demonstrate that ours is a robust and effective approach that can find subsets of features with higher classification accuracy and/or smaller size compared to each individual feature selection algorithm. A common characteristic of text categorization tasks is multi-label classification with a great number of features, which makes wrapper methods time-consuming and impractical. We proposed a simple filter (non-wrapper) approach called Relation Strength and Frequency Variance (RSFV) measure. The basic idea is that informative features are those that are highly correlated with the class and distribute most differently among all classes. The approach is compared with two well-known feature selection methods in the experiments on two standard text corpora. The experiments show that RSFV generate equal or better performance than the others in many cases

Machine Learning in Automated Text Categorization

The automated categorization (or classification) of texts into predefined categories has witnessed a booming interest in the last ten years, due to the increased availability of documents in digital form and the ensuing need to organize them. In the research community the dominant approach to this problem is based on machine learning techniques: a general inductive process automatically builds a classifier by learning, from a set of preclassified documents, the characteristics of the categories. The advantages of this approach over the knowledge engineering approach (consisting in the manual definition of a classifier by domain experts) are a very good effectiveness, considerable savings in terms of expert manpower, and straightforward portability to different domains. This survey discusses the main approaches to text categorization that fall within the machine learning paradigm. We will discuss in detail issues pertaining to three different problems, namely document representation, classifier construction, and classifier evaluation.Comment: Accepted for publication on ACM Computing Survey

Feature Partitioning for the Co-Traning Setting

Supervised learning algorithms rely on availability of labeled data. Labeled data is either scarce or involves substantial human effort in the labeling process. These two factors, along with the abundance of unlabeled data, have spurred research initiatives that exploit unlabeled data to boost supervised learning. This genre of learning algorithms that utilize unlabeled data alongside a small set of labeled data are known as semi-supervised learning algorithms. Data characteristics, such as the presence of a generative model, provide the foundation for applying these learning algorithms. Co-training is one such al gorithm that leverages existence of two redundant views for a data instance. Based on these two views, the co-training algorithm trains two classifiers using the labeled data. The small set of labeled data results in a pair of weak classi fiers. With the help of the unlabeled data the two classifiers alternately boost each other to achieve a high-accuracy classifier. The conditions imposed by the co-training algorithm regarding the data characteristics restrict its application to data that possesses a natural split of the feature set. In this thesis we study the co-training setting and propose to overcome the above mentioned constraint by manufacturing feature splits. We pose and investigate the following questions: 1 . Can a feature split be constructed for a dataset such that the co-training algorithm can be applied to it? 2. If a feature split can be engineered, would splitting the features into more than two partitions give a better classifier? In essence, does moving from co-training (2 classifiers) to k-training (k-classifiers) help? 3. Is there an optimal number of views for a dataset such that k-training leads to an optimal classifier? The task of obtaining feature splits is approached by modeling the problem as a graph partitioning problem. Experiments are conducted on a breadth of text datasets. Results of k-training using constructed feature sets are compared with that of the expectation-maximization algorithm, which has been successful in a semi-supervised setting

The Emerging Trends of Multi-Label Learning

Exabytes of data are generated daily by humans, leading to the growing need for new efforts in dealing with the grand challenges for multi-label learning brought by big data. For example, extreme multi-label classification is an active and rapidly growing research area that deals with classification tasks with an extremely large number of classes or labels; utilizing massive data with limited supervision to build a multi-label classification model becomes valuable for practical applications, etc. Besides these, there are tremendous efforts on how to harvest the strong learning capability of deep learning to better capture the label dependencies in multi-label learning, which is the key for deep learning to address real-world classification tasks. However, it is noted that there has been a lack of systemic studies that focus explicitly on analyzing the emerging trends and new challenges of multi-label learning in the era of big data. It is imperative to call for a comprehensive survey to fulfill this mission and delineate future research directions and new applications.Comment: Accepted to TPAMI 202

Toward practical and private online services

Today's common online services (social networks, media streaming, messaging, email, etc.) bring convenience. However, these services are susceptible to privacy leaks. Certainly, email snooping by rogue employees, email server hacks, and accidental disclosures of user ratings for movies are some sources of private information leakage. This dissertation investigates the following question: Can we build systems that (a) provide strong privacy guarantees to the users, (b) are consistent with existing commercial and policy regimes, and (c) are affordable? Satisfying all three requirements simultaneously is challenging, as providing strong privacy guarantees usually necessitates either sacrificing functionality, incurring high resource costs, or both. Indeed, there are powerful cryptographic protocols---private information retrieval (PIR), and secure two-party computation (2PC)---that provide strong guarantees but are orders of magnitude more expensive than their non-private counterparts. This dissertation takes these protocols as a starting point and then substantially reduces their costs by tailoring them using application-specific properties. It presents two systems, Popcorn and Pretzel, built on this design ethos. Popcorn is a Netflix-like media delivery system, that provably hides, even from the content distributor (for example, Netflix), which movie a user is watching. Popcorn tailors PIR protocols to the media domain. It amortizes the server-side overhead of PIR by batching requests from the large number of concurrent users retrieving content at any given time; and, it forms large batches without introducing playback delays by leveraging the properties of media streaming. Popcorn is consistent with the prevailing commercial regime (copyrights, etc.), and its per-request dollar cost is 3.87 times that of a non-private system. The other system described in this dissertation, Pretzel, is an email system that encrypts emails end-to-end between senders and intended recipients, but allows the email service provider to perform content-based spam filtering and targeted advertising. Pretzel refines a 2PC protocol. It reduces the resource consumption of the protocol by replacing the underlying encryption scheme with a more efficient one, applying a packing technique to conserve invocations of the encryption algorithm, and pruning the inputs to the protocol. Pretzel's costs, versus a legacy non-private implementation, are estimated to be up to 5.4 times for the email provider, with additional but modest client-side requirements. Popcorn and Pretzel have fundamental connections. For instance, the cryptographic protocols in both systems securely compute vector-matrix products. However, we observe that differences in the vector and matrix dimensions lead to different system designs. Ultimately, both systems represent a potentially appealing compromise: sacrifice some functionality to build in strong privacy properties at affordable costs.Computer Science

Explainable Artificial Intelligence Applications in Cyber Security: State-of-the-Art in Research

This survey presents a comprehensive review of current literature on Explainable Artificial Intelligence (XAI) methods for cyber security applications. Due to the rapid development of Internet-connected systems and Artificial Intelligence in recent years, Artificial Intelligence including Machine Learning and Deep Learning has been widely utilized in the fields of cyber security including intrusion detection, malware detection, and spam filtering. However, although Artificial Intelligence-based approaches for the detection and defense of cyber attacks and threats are more advanced and efficient compared to the conventional signature-based and rule-based cyber security strategies, most Machine Learning-based techniques and Deep Learning-based techniques are deployed in the “black-box” manner, meaning that security experts and customers are unable to explain how such procedures reach particular conclusions. The deficiencies of transparencies and interpretability of existing Artificial Intelligence techniques would decrease human users’ confidence in the models utilized for the defense against cyber attacks, especially in current situations where cyber attacks become increasingly diverse and complicated. Therefore, it is essential to apply XAI in the establishment of cyber security models to create more explainable models while maintaining high accuracy and allowing human users to comprehend, trust, and manage the next generation of cyber defense mechanisms. Although there are papers reviewing Artificial Intelligence applications in cyber security areas and the vast literature on applying XAI in many fields including healthcare, financial services, and criminal justice, the surprising fact is that there are currently no survey research articles that concentrate on XAI applications in cyber security. Therefore, the motivation behind the survey is to bridge the research gap by presenting a detailed and up-to-date survey of XAI approaches applicable to issues in the cyber security field. Our work is the first to propose a clear roadmap for navigating the XAI literature in the context of applications in cyber security

Efficient feature reduction and classification methods

Durch die steigende Anzahl verfügbarer Daten in unterschiedlichsten Anwendungsgebieten nimmt der Aufwand vieler Data-Mining Applikationen signifikant zu. Speziell hochdimensionierte Daten (Daten die über viele verschiedene Attribute beschrieben werden) können ein großes Problem für viele Data-Mining Anwendungen darstellen. Neben höheren Laufzeiten können dadurch sowohl für überwachte (supervised), als auch nicht überwachte (unsupervised) Klassifikationsalgorithmen weitere Komplikationen entstehen (z.B. ungenaue Klassifikationsgenauigkeit, schlechte Clustering-Eigenschaften, …). Dies führt zu einem Bedarf an effektiven und effizienten Methoden zur Dimensionsreduzierung. Feature Selection (die Auswahl eines Subsets von Originalattributen) und Dimensionality Reduction (Transformation von Originalattribute in (Linear)-Kombinationen der Originalattribute) sind zwei wichtige Methoden um die Dimension von Daten zu reduzieren. Obwohl sich in den letzten Jahren vielen Studien mit diesen Methoden beschäftigt haben, gibt es immer noch viele offene Fragestellungen in diesem Forschungsgebiet. Darüber hinaus ergeben sich in vielen Anwendungsbereichen durch die immer weiter steigende Anzahl an verfügbaren und verwendeten Attributen und Features laufend neue Probleme. Das Ziel dieser Dissertation ist es, verschiedene Fragenstellungen in diesem Bereich genau zu analysieren und Verbesserungsmöglichkeiten zu entwickeln. Grundsätzlich, werden folgende Ansprüche an Methoden zur Feature Selection und Dimensionality Reduction gestellt: Die Methoden sollten effizient (bezüglich ihres Rechenaufwandes) sein und die resultierenden Feature-Sets sollten die Originaldaten möglichst kompakt repräsentieren können. Darüber hinaus ist es in vielen Anwendungsgebieten wichtig, die Interpretierbarkeit der Originaldaten beizubehalten. Letztendlich sollte der Prozess der Dimensionsreduzierung keinen negativen Effekt auf die Klassifikationsgenauigkeit haben - sondern idealerweise, diese noch verbessern. Offene Problemstellungen in diesem Bereich betreffen unter anderem den Zusammenhang zwischen Methoden zur Dimensionsreduzierung und der resultierenden Klassifikationsgenauigkeit, wobei sowohl eine möglichst kompakte Repräsentation der Daten, als auch eine hohe Klassifikationsgenauigkeit erzielt werden sollen. Wie bereits erwähnt, ergibt sich durch die große Anzahl an Daten auch ein erhöhter Rechenaufwand, weshalb schnelle und effektive Methoden zur Dimensionsreduzierung entwickelt werden müssen, bzw. existierende Methoden verbessert werden müssen. Darüber hinaus sollte natürlich auch der Rechenaufwand der verwendeten Klassifikationsmethoden möglichst gering sein. Des Weiteren ist die Interpretierbarkeit von Feature Sets zwar möglich, wenn Feature Selection Methoden für die Dimensionsreduzierung verwendet werden, im Fall von Dimensionality Reduction sind die resultierenden Feature Sets jedoch meist Linearkombinationen der Originalfeatures. Daher ist es schwierig zu überprüfen, wie viel Information einzelne Originalfeatures beitragen. Im Rahmen dieser Dissertation konnten wichtige Beiträge zu den oben genannten Problemstellungen präsentiert werden: Es wurden neue, effiziente Initialisierungsvarianten für die Dimensionality Reduction Methode Nonnegative Matrix Factorization (NMF) entwickelt, welche im Vergleich zu randomisierter Initialisierung und im Vergleich zu State-of-the-Art Initialisierungsmethoden zu einer schnelleren Reduktion des Approximationsfehlers führen. Diese Initialisierungsvarianten können darüber hinaus mit neu entwickelten und sehr effektiven Klassifikationsalgorithmen basierend auf NMF kombiniert werden. Um die Laufzeit von NMF weiter zu steigern wurden unterschiedliche Varianten von NMF Algorithmen auf Multi-Prozessor Systemen vorgestellt, welche sowohl Task- als auch Datenparallelismus unterstützen und zu einer erheblichen Reduktion der Laufzeit für NMF führen. Außerdem wurde eine effektive Verbesserung der Matlab Implementierung des ALS Algorithmus vorgestellt. Darüber hinaus wurde eine Technik aus dem Bereich des Information Retrieval -- Latent Semantic Indexing -- erfolgreich als Klassifikationsalgorithmus für Email Daten angewendet. Schließlich wurde eine ausführliche empirische Studie über den Zusammenhang verschiedener Feature Reduction Methoden (Feature Selection und Dimensionality Reduction) und der resultierenden Klassifikationsgenauigkeit unterschiedlicher Lernalgorithmen präsentiert. Der starke Einfluss unterschiedlicher Methoden zur Dimensionsreduzierung auf die resultierende Klassifikationsgenauigkeit unterstreicht dass noch weitere Untersuchungen notwendig sind um das komplexe Zusammenspiel von Dimensionsreduzierung und Klassifikation genau analysieren zu können.The sheer volume of data today and its expected growth over the next years are some of the key challenges in data mining and knowledge discovery applications. Besides the huge number of data samples that are collected and processed, the high dimensional nature of data arising in many applications causes the need to develop effective and efficient techniques that are able to deal with this massive amount of data. In addition to the significant increase in the demand of computational resources, those large datasets might also influence the quality of several data mining applications (especially if the number of features is very high compared to the number of samples). As the dimensionality of data increases, many types of data analysis and classification problems become significantly harder. This can lead to problems for both supervised and unsupervised learning. Dimensionality reduction and feature (subset) selection methods are two types of techniques for reducing the attribute space. While in feature selection a subset of the original attributes is extracted, dimensionality reduction in general produces linear combinations of the original attribute set. In both approaches, the goal is to select a low dimensional subset of the attribute space that covers most of the information of the original data. During the last years, feature selection and dimensionality reduction techniques have become a real prerequisite for data mining applications. There are several open questions in this research field, and due to the often increasing number of candidate features for various application areas (e.\,g., email filtering or drug classification/molecular modeling) new questions arise. In this thesis, we focus on some open research questions in this context, such as the relationship between feature reduction techniques and the resulting classification accuracy and the relationship between the variability captured in the linear combinations of dimensionality reduction techniques (e.\,g., PCA, SVD) and the accuracy of machine learning algorithms operating on them. Another important goal is to better understand new techniques for dimensionality reduction, such as nonnegative matrix factorization (NMF), which can be applied for finding parts-based, linear representations of nonnegative data. This ``sum-of-parts'' representation is especially useful if the interpretability of the original data should be retained. Moreover, performance aspects of feature reduction algorithms are investigated. As data grow, implementations of feature selection and dimensionality reduction techniques for high-performance parallel and distributed computing environments become more and more important. In this thesis, we focus on two types of open research questions: methodological advances without any specific application context, and application-driven advances for a specific application context. Summarizing, new methodological contributions are the following: The utilization of nonnegative matrix factorization in the context of classification methods is investigated. In particular, it is of interest how the improved interpretability of NMF factors due to the non-negativity constraints (which is of central importance in various problem settings) can be exploited. Motivated by this problem context two new fast initialization techniques for NMF based on feature selection are introduced. It is shown how approximation accuracy can be increased and/or how computational effort can be reduced compared to standard randomized seeding of the NMF and to state-of-the-art initialization strategies suggested earlier. For example, for a given number of iterations and a required approximation error a speedup of 3.6 compared to standard initialization, and a speedup of 3.4 compared to state-of-the-art initialization strategies could be achieved. Beyond that, novel classification methods based on the NMF are proposed and investigated. We can show that they are not only competitive in terms of classification accuracy with state-of-the-art classifiers, but also provide important advantages in terms of computational effort (especially for low-rank approximations). Moreover, parallelization and distributed execution of NMF is investigated. Several algorithmic variants for efficiently computing NMF on multi-core systems are studied and compared to each other. In particular, several approaches for exploiting task and/or data-parallelism in NMF are studied. We show that for some scenarios new algorithmic variants clearly outperform existing implementations. Last, but not least, a computationally very efficient adaptation of the implementation of the ALS algorithm in Matlab 2009a is investigated. This variant reduces the runtime significantly (in some settings by a factor of 8) and also provides several possibilities to be executed concurrently. In addition to purely methodological questions, we also address questions arising in the adaptation of feature selection and classification methods to two specific application problems: email classification and in silico screening for drug discovery. Different research challenges arise in the contexts of these different application areas, such as the dynamic nature of data for email classification problems, or the imbalance in the number of available samples of different classes for drug discovery problems. Application-driven advances of this thesis comprise the adaptation and application of latent semantic indexing (LSI) to the task of email filtering. Experimental results show that LSI achieves significantly better classification results than the widespread de-facto standard method for this special application context. In the context of drug discovery problems, several groups of well discriminating descriptors could be identified by utilizing the ``sum-of-parts`` representation of NMF. The number of important descriptors could be further increased when applying sparseness constraints on the NMF factors