Formalisation and experiences of R2RML-based SPARQL to SQL query translation using Morph

R2RML is used to specify transformations of data available in relational databases into materialised or virtual RDF datasets. SPARQL queries evaluated against virtual datasets are translated into SQL queries according to the R2RML mappings, so that they can be evaluated over the underlying relational database engines. In this paper we describe an extension of a well-known algorithm for SPARQL to SQL translation, originally formalised for RDBMS-backed triple stores, that takes into account R2RML mappings. We present the result of our implementation using queries from a synthetic benchmark and from three real use cases, and show that SPARQL queries can be in general evaluated as fast as the SQL queries that would have been generated by SQL experts if no R2RML mappings had been used

Ontop: answering SPARQL queries over relational databases

We present Ontop, an open-source Ontology-Based Data Access (OBDA) system that allows for querying relational data sources through a conceptual representation of the domain of interest, provided in terms of an ontology, to which the data sources are mapped. Key features of Ontop are its solid theoretical foundations, a virtual approach to OBDA, which avoids materializing triples and is implemented through the query rewriting technique, extensive optimizations exploiting all elements of the OBDA architecture, its compliance to all relevant W3C recommendations (including SPARQL queries, R2RML mappings, and OWL2QL and RDFS ontologies), and its support for all major relational databases

A survey of RDB to RDF translation approaches and tools

ISRN I3S/RR 2013-04-FR 24 pagesRelational databases scattered over the web are generally opaque to regular web crawling tools. To address this concern, many RDB-to-RDF approaches have been proposed over the last years. In this paper, we propose a detailed review of seventeen RDB-to-RDF initiatives, considering end-to-end projects that delivered operational tools. The different tools are classified along three major axes: mapping description language, mapping implementation and data retrieval method. We analyse the motivations, commonalities and differences between existing approaches. The expressiveness of existing mapping languages is not always sufficient to produce semantically rich data and make it usable, interoperable and linkable. We therefore briefly present various strategies investigated in the literature to produce additional knowledge. Finally, we show that R2RML, the W3C recommendation for describing RDB to RDF mappings, may not apply to all needs in the wide scope of RDB to RDF translation applications, leaving space for future extensions

Answering SPARQL queries over databases under OWL 2 QL entailment regime

We present an extension of the ontology-based data access platform Ontop that supports answering SPARQL queries under the OWL 2 QL direct semantics entailment regime for data instances stored in relational databases. On the theoretical side, we show how any input SPARQL query, OWL 2 QL ontology and R2RML mappings can be rewritten to an equivalent SQL query solely over the data. On the practical side, we present initial experimental results demonstrating that by applying the Ontop technologies—the tree-witness query rewriting, T-mappings compiling R2RML mappings with ontology hierarchies, and T-mapping optimisations using SQL expressivity and database integrity constraints—the system produces scalable SQL queries

GeoTriples: Transforming geospatial data into RDF graphs using R2RML and RML mappings

A lot of geospatial data has become available at no charge in many countries recently. Geospatial data that is currently made available by government agencies usually do not follow the linked data paradigm. In the few cases where government agencies do follow the linked data paradigm (e.g., Ordnance Survey in the United Kingdom), specialized scripts have been used for transforming geospatial data into RDF. In this paper we present the open source tool GeoTriples which generates and processes extended R2RML and RML mappings that transform geospatial data from many input formats into RDF. GeoTriples allows the transformation of geospatial data stored in raw files (shapefiles, CSV, KML, XML, GML and GeoJSON) and spatially-enabled RDBMS (PostGIS and MonetDB) into RDF graphs using well-known vocabularies like GeoSPARQL and stSPARQL, but without being tightly coupled to a specific vocabulary. GeoTriples has been developed in European projects LEO and Melodies and has been used to transform many geospatial data sources into linked data. We study the performance of GeoTriples experimentally using large publicly available geospatial datasets, and show that GeoTriples is very efficient and scalable especially when its mapping processor is implemented using Apache Hadoop

Translation of Heterogeneous Databases into RDF, and Application to the Construction of a SKOS Taxonomical Reference

International audienceWhile the data deluge accelerates, most of the data produced remains locked in deep Web databases. For the linked open data to benefit from the potential represented by this huge amount of data, it is crucial to come up with solutions to expose heterogeneous databases as linked data. The xR2RML mapping language is an endeavor towards this goal: it is designed to map various types of databases to RDF, by flexibly adapting to heterogeneous query languages and data models while remaining free from any specific language. It extends R2RML, the W3C recommendation for the mapping of relational databases to RDF, and relies on RML for the handling of various data formats. In this paper we present xR2RML, we analyse data models of several modern databases as well as the format in which query results are returned , and we show how xR2RML translates any result data element into RDF, relying on existing languages such as XPath and JSONPath when necessary. We illustrate some features of xR2RML such as the generation of RDF collections and containers, and the ability to deal with mixed data formats. We also describe a real-world use case in which we applied xR2RML to build a SKOS thesaurus aimed at supporting studies on History of Zoology, Archaeozoology and Conservation Biology