BlogForever D2.4: Weblog spider prototype and associated methodology

The purpose of this document is to present the evaluation of different solutions for capturing blogs, established methodology and to describe the developed blog spider prototype

SoK: Cryptographically Protected Database Search

Protected database search systems cryptographically isolate the roles of reading from, writing to, and administering the database. This separation limits unnecessary administrator access and protects data in the case of system breaches. Since protected search was introduced in 2000, the area has grown rapidly; systems are offered by academia, start-ups, and established companies. However, there is no best protected search system or set of techniques. Design of such systems is a balancing act between security, functionality, performance, and usability. This challenge is made more difficult by ongoing database specialization, as some users will want the functionality of SQL, NoSQL, or NewSQL databases. This database evolution will continue, and the protected search community should be able to quickly provide functionality consistent with newly invented databases. At the same time, the community must accurately and clearly characterize the tradeoffs between different approaches. To address these challenges, we provide the following contributions: 1) An identification of the important primitive operations across database paradigms. We find there are a small number of base operations that can be used and combined to support a large number of database paradigms. 2) An evaluation of the current state of protected search systems in implementing these base operations. This evaluation describes the main approaches and tradeoffs for each base operation. Furthermore, it puts protected search in the context of unprotected search, identifying key gaps in functionality. 3) An analysis of attacks against protected search for different base queries. 4) A roadmap and tools for transforming a protected search system into a protected database, including an open-source performance evaluation platform and initial user opinions of protected search.Comment: 20 pages, to appear to IEEE Security and Privac

Near-Memory Address Translation

Memory and logic integration on the same chip is becoming increasingly cost effective, creating the opportunity to offload data-intensive functionality to processing units placed inside memory chips. The introduction of memory-side processing units (MPUs) into conventional systems faces virtual memory as the first big showstopper: without efficient hardware support for address translation MPUs have highly limited applicability. Unfortunately, conventional translation mechanisms fall short of providing fast translations as contemporary memories exceed the reach of TLBs, making expensive page walks common. In this paper, we are the first to show that the historically important flexibility to map any virtual page to any page frame is unnecessary in today's servers. We find that while limiting the associativity of the virtual-to-physical mapping incurs no penalty, it can break the translate-then-fetch serialization if combined with careful data placement in the MPU's memory, allowing for translation and data fetch to proceed independently and in parallel. We propose the Distributed Inverted Page Table (DIPTA), a near-memory structure in which the smallest memory partition keeps the translation information for its data share, ensuring that the translation completes together with the data fetch. DIPTA completely eliminates the performance overhead of translation, achieving speedups of up to 3.81x and 2.13x over conventional translation using 4KB and 1GB pages respectively.Comment: 15 pages, 9 figure

Optimising data centre operation by removing the transport bottleneck

Data centres lie at the heart of almost every service on the Internet. Data centres are used to provide search results, to power social media, to store and index email, to host “cloud” applications, for online retail and to provide a myriad of other web services. Consequently the more efficient they can be made the better for all of us. The power of modern data centres is in combining commodity off-the-shelf server hardware and network equipment to provide what Google’s Barrosso and Ho ̈lzle describe as “warehouse scale” computers. Data centres rely on TCP, a transport protocol that was originally designed for use in the Internet. Like other such protocols, TCP has been optimised to maximise throughput, usually by filling up queues at the bottleneck. However, for most applications within a data centre network latency is more critical than throughput. Consequently the choice of transport protocol becomes a bottleneck for performance. My thesis is that the solution to this is to move away from the use of one-size-fits-all transport protocols towards ones that have been designed to reduce latency across the data centre and which can dynamically respond to the needs of the applications. This dissertation focuses on optimising the transport layer in data centre networks. In particular I address the question of whether any single transport mechanism can be flexible enough to cater to the needs of all data centre traffic. I show that one leading protocol (DCTCP) has been heavily optimised for certain network conditions. I then explore approaches that seek to minimise latency for applications that care about it while still allowing throughput-intensive applications to receive a good level of service. My key contributions to this are Silo and Trevi. Trevi is a novel transport system for storage traffic that utilises fountain coding to max- imise throughput and minimise latency while being agnostic to drop, thus allowing storage traffic to be pushed out of the way when latency sensitive traffic is present in the network. Silo is an admission control system that is designed to give tenants of a multi-tenant data centre guaranteed low latency network performance. Both of these were developed in collaboration with others

Evaluation of Storage Systems for Big Data Analytics

abstract: Recent trends in big data storage systems show a shift from disk centric models to memory centric models. The primary challenges faced by these systems are speed, scalability, and fault tolerance. It is interesting to investigate the performance of these two models with respect to some big data applications. This thesis studies the performance of Ceph (a disk centric model) and Alluxio (a memory centric model) and evaluates whether a hybrid model provides any performance benefits with respect to big data applications. To this end, an application TechTalk is created that uses Ceph to store data and Alluxio to perform data analytics. The functionalities of the application include offline lecture storage, live recording of classes, content analysis and reference generation. The knowledge base of videos is constructed by analyzing the offline data using machine learning techniques. This training dataset provides knowledge to construct the index of an online stream. The indexed metadata enables the students to search, view and access the relevant content. The performance of the application is benchmarked in different use cases to demonstrate the benefits of the hybrid model.Dissertation/ThesisMasters Thesis Computer Science 201

ULTRA-FAST AND MEMORY-EFFICIENT LOOKUPS FOR CLOUD, NETWORKED SYSTEMS, AND MASSIVE DATA MANAGEMENT

Systems that process big data (e.g., high-traffic networks and large-scale storage) prefer data structures and algorithms with small memory and fast processing speed. Efficient and fast algorithms play an essential role in system design, despite the improvement of hardware. This dissertation is organized around a novel algorithm called Othello Hashing. Othello Hashing supports ultra-fast and memory-efficient key-value lookup, and it fits the requirements of the core algorithms of many large-scale systems and big data applications. Using Othello hashing, combined with domain expertise in cloud, computer networks, big data, and bioinformatics, I developed the following applications that resolve several major challenges in the area. Concise: Forwarding Information Base. A Forwarding Information Base is a data structure used by the data plane of a forwarding device to determine the proper forwarding actions for packets. The polymorphic property of Othello Hashing the separation of its query and control functionalities, which is a perfect match to the programmable networks such as Software Defined Networks. Using Othello Hashing, we built a fast and scalable FIB named \textit{Concise}. Extensive evaluation results on three different platforms show that Concise outperforms other FIB designs. SDLB: Cloud Load Balancer. In a cloud network, the layer-4 load balancer servers is a device that acts as a reverse proxy and distributes network or application traffic across a number of servers. We built a software load balancer with Othello Hashing techniques named SDLB. SDLB is able to accomplish two functionalities of the SDLB using one Othello query: to find the designated server for packets of ongoing sessions and to distribute new or session-free packets. MetaOthello: Taxonomic Classification of Metagenomic Sequences. Metagenomic read classification is a critical step in the identification and quantification of microbial species sampled by high-throughput sequencing. Due to the growing popularity of metagenomic data in both basic science and clinical applications, as well as the increasing volume of data being generated, efficient and accurate algorithms are in high demand. We built a system to support efficient classification of taxonomic sequences using its k-mer signatures. SeqOthello: RNA-seq Sequence Search Engine. Advances in the study of functional genomics produced a vast supply of RNA-seq datasets. However, how to quickly query and extract information from sequencing resources remains a challenging problem and has been the bottleneck for the broader dissemination of sequencing efforts. The challenge resides in both the sheer volume of the data and its nature of unstructured representation. Using the Othello Hashing techniques, we built the SeqOthello sequence search engine. SeqOthello is a reference-free, alignment-free, and parameter-free sequence search system that supports arbitrary sequence query against large collections of RNA-seq experiments, which enables large-scale integrative studies using sequence-level data

Honeycomb: ordered key-value store acceleration on an FPGA-based SmartNIC

In-memory ordered key-value stores are an important building block in modern distributed applications. We present Honeycomb, a hybrid software-hardware system for accelerating read-dominated workloads on ordered key-value stores that provides linearizability for all operations including scans. Honeycomb stores a B-Tree in host memory, and executes SCAN and GET on an FPGA-based SmartNIC, and PUT, UPDATE and DELETE on the CPU. This approach enables large stores and simplifies the FPGA implementation but raises the challenge of data access and synchronization across the slow PCIe bus. We describe how Honeycomb overcomes this challenge with careful data structure design, caching, request parallelism with out-of-order request execution, wait-free read operations, and batching synchronization between the CPU and the FPGA. For read-heavy YCSB workloads, Honeycomb improves the throughput of a state-of-the-art ordered key-value store by at least 1.8x. For scan-heavy workloads inspired by cloud storage, Honeycomb improves throughput by more than 2x. The cost-performance, which is more important for large-scale deployments, is improved by at least 1.5x on these workloads