Multiprocessor-safe Wait-free Queue in RTSJ

Currently, most computer systems are running on multiprocessors (or multicores). Moreover, the number of cores inside the processor are expected to increase. To be able to utilise the increased computational power in these systems, developers are enforced to expose more parallelism within their applications. Multi-threading is one of the common techniques that are used to introduce parallelism within computer applications. Shared data structures are in the core of multi-threaded applications; these data structures facilitate the communication between the different threads to help in completing the designed tasks within the application. A control mechanism should be provided such that the access of any thread will not compromise the consistency and correctness of the data structure contents. The increased number of threads will result in an increased competition, this will lead to inevitable difficulties in understanding the interleaving scenarios at runtime, hence, the time analysis will be a very complex task. The Real-Time Specification for Java (RTSJ) introduces different shared queues that can facilitate communication between different threads within the application. However, these queues are uni-directional enabling communication between standard Java threads and the realtime thread classes, which the RTSJ introduces. The work presented in this thesis introduces a novel algorithm for concurrently accessing shared data structures in a shared memory multi-processor (or multi-core) systems. The proposed algorithm is implemented as an arraybased First-In-First-Out (FIFO) queue, which improves the scalability and time predictability in multi-threaded applications. The algorithm utilises the different features that the RTSJ introduces to ensure the time predictability

Hybrid STM/HTM for nested transactions in Java

Transactional memory (TM) has long been advocated as a promising pathway to more automated concurrency control for scaling concurrent programs running on parallel hardware. Software TM (STM) has the benefit of being able to run general transactional programs, but at the significant cost of overheads imposed to log memory accesses, mediate access conflicts, and maintain other transaction metadata. Recently, hardware manufacturers have begun to offer commodity hardware TM (HTM) support in their processors wherein the transaction metadata is maintained “for free” in hardware. However, HTM approaches are only best-effort: they cannot successfully run all transactional programs, whether because of hardware capacity issues (causing large transactions to fail), or compatibility restrictions on the processor instructions permitted within hardware transactions (causing transactions that execute those instructions to fail). In such cases, programs must include failure-handling code to attempt the computation by some other software means, since retrying the transaction would be futile. This dissertation describes the design and prototype implementation of a dialect of Java, XJ, that supports closed, open nested and boosted transactions. The design of XJ, allows natural expression of layered abstractions for concurrent data structures, while promoting improved concurrency for operations on those abstractions. We also describe how software and hardware schemes can combine seamlessly into a hybrid system in support of transactional programs, allowing use of low-cost HTM when it works, but reverting to STM when it doesn’t. We describe heuristics used to make this choice dynamically and automatically, but allowing the transition back to HTM opportunistically. Both schemes are compatible to allow different threads to run concurrently with either mechanism, while preserving transaction safety. Using a standard synthetic benchmark we demonstrate that HTM offers significant acceleration of both closed and open nested transactions, while yielding parallel scaling up to the limits of the hardware, whereupon scaling in software continues but with the penalty to throughput imposed by software mechanisms

A Survey on the Evolution of Stream Processing Systems

Stream processing has been an active research field for more than 20 years, but it is now witnessing its prime time due to recent successful efforts by the research community and numerous worldwide open-source communities. This survey provides a comprehensive overview of fundamental aspects of stream processing systems and their evolution in the functional areas of out-of-order data management, state management, fault tolerance, high availability, load management, elasticity, and reconfiguration. We review noteworthy past research findings, outline the similarities and differences between early ('00-'10) and modern ('11-'18) streaming systems, and discuss recent trends and open problems.Comment: 34 pages, 15 figures, 5 table

Software lock elision for x86 machine code

More than a decade after becoming a topic of intense research there is no transactional memory hardware nor any examples of software transactional memory use outside the research community. Using software transactional memory in large pieces of software needs copious source code annotations and often means that standard compilers and debuggers can no longer be used. At the same time, overheads associated with software transactional memory fail to motivate programmers to expend the needed effort to use software transactional memory. The only way around the overheads in the case of general unmanaged code is the anticipated availability of hardware support. On the other hand, architects are unwilling to devote power and area budgets in mainstream microprocessors to hardware transactional memory, pointing to transactional memory being a "niche" programming construct. A deadlock has thus ensued that is blocking transactional memory use and experimentation in the mainstream. This dissertation covers the design and construction of a software transactional memory runtime system called SLE_x86 that can potentially break this deadlock by decoupling transactional memory from programs using it. Unlike most other STM designs, the core design principle is transparency rather than performance. SLE_x86 operates at the level of x86 machine code, thereby becoming immediately applicable to binaries for the popular x86 architecture. The only requirement is that the binary synchronise using known locking constructs or calls such as those in Pthreads or OpenMP libraries. SLE_x86 provides speculative lock elision (SLE) entirely in software, executing critical sections in the binary using transactional memory. Optionally, the critical sections can also be executed without using transactions by acquiring the protecting lock. The dissertation makes a careful analysis of the impact on performance due to the demands of the x86 memory consistency model and the need to transparently instrument x86 machine code. It shows that both of these problems can be overcome to reach a reasonable level of performance, where transparent software transactional memory can perform better than a lock. SLE_x86 can ensure that programs are ready for transactional memory in any form, without being explicitly written for it

Partial Aborts for Transactions via First Class Continuations

Software transactional memory (STM) has proven to be a useful abstraction for developing concurrent applications where programmers denote transactions with an atomic construct that delimits a collection of reads and writes to shared mutable references. The runtime system then guarantees that all transactions are observed to execute atomically with respect to each other. Traditionally, when the runtime system detects that one transaction conflicts with another, it aborts one of the transactions and restarts its execution from the beginning. This can lead to problems with both execution time and throughput. This thesis presents a novel approach that uses first-class continuations to restart a conflicting transaction at the point of a conflict, avoiding the re-execution of any work from the beginning of the transaction that has not been compromised. In practice, this allows transactions to complete more quickly, decreasing execution time and increasing throughput. The ideas presented in this thesis have been implemented in the context of the Manticore project, an ML-family language with support for parallelism and concurrency. Crucially, this work relies on constant-time continuation capturing via a continuation-passing-style (CPS) transformation and heap-allocated continuations. The partial abort scheme has been implemented as a part of three modern STM implementations: TL2, TinySTM, and NOrec. Experimental results show that, while no base STM implementation is universally best, each partial-abort implementation compares favorably to its full-abort counterpart. In addition to an implementation, this thesis presents a formal semantics for partial aborts. A proof of correctness is given by relating the partial-abort semantics to an analogous full-abort semantics via a simulation. All proofs have been formally verified using the Coq Theorem Prover

Compilation Optimizations to Enhance Resilience of Big Data Programs and Quantum Processors

Modern computers can experience a variety of transient errors due to the surrounding environment, known as soft faults. Although the frequency of these faults is low enough to not be noticeable on personal computers, they become a considerable concern during large-scale distributed computations or systems in more vulnerable environments like satellites. These faults occur as a bit flip of some value in a register, operation, or memory during execution. They surface as either program crashes, hangs, or silent data corruption (SDC), each of which can waste time, money, and resources. Hardware methods, such as shielding or error correcting memory (ECM), exist, though they can be difficult to implement, expensive, and may be limited to only protecting against errors in specific locations. Researchers have been exploring software detection and correction methods as an alternative, commonly trading either overhead in execution time or memory usage to protect against faults. Quantum computers, a relatively recent advancement in computing technology, experience similar errors on a much more severe scale. The errors are more frequent, costly, and difficult to detect and correct. Error correction algorithms like Shor’s code promise to completely remove errors, but they cannot be implemented on current noisy intermediate-scale quantum (NISQ) systems due to the low number of available qubits. Until the physical systems become large enough to support error correction, researchers instead have been studying other methods to reduce and compensate for errors. In this work, we present two methods for improving the resilience of classical processes, both single- and multi-threaded. We then introduce quantum computing and compare the nature of errors and correction methods to previous classical methods. We further discuss two designs for improving compilation of quantum circuits. One method, focused on quantum neural networks (QNNs), takes advantage of partial compilation to avoid recompiling the entire circuit each time. The other method is a new approach to compiling quantum circuits using graph neural networks (GNNs) to improve the resilience of quantum circuits and increase fidelity. By using GNNs with reinforcement learning, we can train a compiler to provide improved qubit allocation that improves the success rate of quantum circuits

Enhancing the efficiency and practicality of software transactional memory on massively multithreaded systems

Chip Multithreading (CMT) processors promise to deliver higher performance by running more than one stream of instructions in parallel. To exploit CMT's capabilities, programmers have to parallelize their applications, which is not a trivial task. Transactional Memory (TM) is one of parallel programming models that aims at simplifying synchronization by raising the level of abstraction between semantic atomicity and the means by which that atomicity is achieved. TM is a promising programming model but there are still important challenges that must be addressed to make it more practical and efficient in mainstream parallel programming. The first challenge addressed in this dissertation is that of making the evaluation of TM proposals more solid with realistic TM benchmarks and being able to run the same benchmarks on different STM systems. We first introduce a benchmark suite, RMS-TM, a comprehensive benchmark suite to evaluate HTMs and STMs. RMS-TM consists of seven applications from the Recognition, Mining and Synthesis (RMS) domain that are representative of future workloads. RMS-TM features current TM research issues such as nesting and I/O inside transactions, while also providing various TM characteristics. Most STM systems are implemented as user-level libraries: the programmer is expected to manually instrument not only transaction boundaries, but also individual loads and stores within transactions. This library-based approach is increasingly tedious and error prone and also makes it difficult to make reliable performance comparisons. To enable an "apples-to-apples" performance comparison, we then develop a software layer that allows researchers to test the same applications with interchangeable STM back ends. The second challenge addressed is that of enhancing performance and scalability of TM applications running on aggressive multi-core/multi-threaded processors. Performance and scalability of current TM designs, in particular STM desings, do not always meet the programmer's expectation, especially at scale. To overcome this limitation, we propose a new STM design, STM2, based on an assisted execution model in which time-consuming TM operations are offloaded to auxiliary threads while application threads optimistically perform computation. Surprisingly, our results show that STM2 provides, on average, speedups between 1.8x and 5.2x over state-of-the-art STM systems. On the other hand, we notice that assisted-execution systems may show low processor utilization. To alleviate this problem and to increase the efficiency of STM2, we enriched STM2 with a runtime mechanism that automatically and adaptively detects application and auxiliary threads' computing demands and dynamically partition hardware resources between the pair through the hardware thread prioritization mechanism implemented in POWER machines. The third challenge is to define a notion of what it means for a TM program to be correctly synchronized. The current definition of transactional data race requires all transactions to be totally ordered "as if'' serialized by a global lock, which limits the scalability of TM designs. To remove this constraint, we first propose to relax the current definition of transactional data race to allow a higher level of concurrency. Based on this definition we propose the first practical race detection algorithm for C/C++ applications (TRADE) and implement the corresponding race detection tool. Then, we introduce a new definition of transactional data race that is more intuitive, transparent to the underlying TM implementation, can be used for a broad set of C/C++ TM programs. Based on this new definition, we proposed T-Rex, an efficient and scalable race detection tool for C/C++ TM applications. Using TRADE and T-Rex, we have discovered subtle transactional data races in widely-used STAMP applications which have not been reported in the past

Programming Persistent Memory

Beginning and experienced programmers will use this comprehensive guide to persistent memory programming. You will understand how persistent memory brings together several new software/hardware requirements, and offers great promise for better performance and faster application startup times—a huge leap forward in byte-addressable capacity compared with current DRAM offerings. This revolutionary new technology gives applications significant performance and capacity improvements over existing technologies. It requires a new way of thinking and developing, which makes this highly disruptive to the IT/computing industry. The full spectrum of industry sectors that will benefit from this technology include, but are not limited to, in-memory and traditional databases, AI, analytics, HPC, virtualization, and big data. Programming Persistent Memory describes the technology and why it is exciting the industry. It covers the operating system and hardware requirements as well as how to create development environments using emulated or real persistent memory hardware. The book explains fundamental concepts; provides an introduction to persistent memory programming APIs for C, C++, JavaScript, and other languages; discusses RMDA with persistent memory; reviews security features; and presents many examples. Source code and examples that you can run on your own systems are included. What You’ll Learn Understand what persistent memory is, what it does, and the value it brings to the industry Become familiar with the operating system and hardware requirements to use persistent memory Know the fundamentals of persistent memory programming: why it is different from current programming methods, and what developers need to keep in mind when programming for persistence Look at persistent memory application development by example using the Persistent Memory Development Kit (PMDK) Design and optimize data structures for persistent memory Study how real-world applications are modified to leverage persistent memory Utilize the tools available for persistent memory programming, application performance profiling, and debugging Who This Book Is For C, C++, Java, and Python developers, but will also be useful to software, cloud, and hardware architects across a broad spectrum of sectors, including cloud service providers, independent software vendors, high performance compute, artificial intelligence, data analytics, big data, etc

ADDING PERSISTENCE TO MAIN MEMORY PROGRAMMING

Unlocking the true potential of the new persistent memories (PMEMs) requires eliminating traditional persistent I/O abstractions altogether, by introducing persistent semantics directly into main memory programming. Such a programming model elevates failure atomicity to a first-class application property in addition to in-memory data layout, concurrency-control, and fault tolerance, and therefore requires redesign of programming abstractions for both program correctness and maximum performance gains. To address these challenges, this thesis proposes a set of system software designs that integrate persistence with main memory programming, and makes the following contributions. First, this thesis proposes a PMEM-aware I/O runtime, NVStream, that supports fast durable streaming I/O. NVStream uses a memory-based I/O interface that integrates with existing I/O data movement operations of an application to accelerate persistent data writes. NVStream carefully designs its persistent data storage layout and crash-consistent semantics to match both application and PMEM characteristics. Specifically, we leverage the streaming nature of I/O in HPC workflows, to benefit from using a log-structured PMEM storage engine design, that uses relaxed write orderings and append-only failure-atomic semantics to form strongly consistent application checkpoints. Furthermore, we identify that optimizing the I/O software stack exposes the PMEM bandwidth limitations as a bottleneck during parallel HPC I/O writes, and propose a novel data movement design – PHX. PHX uses alternative network data movement paths available in datacenters to ease up the bandwidth pressure on the PMEM memory interconnects, all while maintaining the correctness of the persistent data. Next, the thesis explores the challenges and opportunities of using PMEM for true main memory persistent programming – a single data domain for both runtime and persistent applicationstate. Such a programming model includes maintaining ACID properties during each and every update to applications persistent structures. ACID-qualified persistent programming for multi-threaded applications is hard, as the programmer has to reason about both crash-consistency and synchronization – crash-sync – semantics for programming correctness. The thesis contributes new understanding of the correctness requirements for mixing different crash-consistent and synchronization protocols, characterizes the performance of different crash-sync realizations for different applications and hardware architectures, and draws actionable insights for future designs of PMEM systems. Finally, the application state stored on node-local persistent memory is still vulnerable to catastrophic node failures. The thesis proposes a replicated persistent memory runtime, Blizzard, that supports truly fault tolerant, concurrent and persistent data-structure programming. Blizzard carefully integrates userspace networking with byte addressable PMEM for a fast, persistent memory replication runtime. The design also incorporates a replication-aware crash-sync protocol that supports consistent and concurrent updates on persistent data-structures. Blizzard offers applications the flexibility to use the data structures that best match their functional requirements, while offering better performance, and providing crucial reliability guarantees lacking from existing persistent memory runtimes.Ph.D